AMCG00019927


Basic Information

Item Value
gene id AMCG00019927
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2970844 ~ 2989870 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019927
GTCGTGAGGTGTCCAAGATGGCGGCGCCCTGTGGAGTGGAGCTGCTCTAATAGTGGTGCCTGGAGACTGAAGTGGCAGGTGGCCCCAGGAGCCGGCCTGGGAGGACAGGGAGCCGACAGTGACGTGCAAGAGCCCCCTCCATCCCCCCGTCCCCTCCTGCGTGTGACACAGCCCCGCACCCCCCGCCCGGCCACAGCATGGCTCGGGAGCAGCCCAACATGGGGgacctcctccctctcctggagTCGTCTGACCTGCACGAGCTGGACGAGATCAAGGCCCTCGTCAACGAGCACCTCAGCTCAGATCGAGGGTCCCTTTTACTGAATGGTCTGGTGGACTATTACCTGGAGACCAGCTCCCCGCAGGCCTTGCACATCCTGTCCTCTGTGAGGGAGCCTCACGACAAGCACCTTTTTGACAAGATGAACGAATGCATGGCCAAGCCCGCCTGCCGCCTGGCCACCCTCACGCTGCTGGGGCACGTCATCCGGAAACAGCCGCCCTGGATCCACAAGATCTCCCGCACCCCCCTGCTGCTCTCGTTGCTCAAATGCCTCAAGACGGACACAGACGTCGTGGTCCTCATCACCGGAGTCCTTGTGTTGATCATCCTCCTGCCCATGATCCCGCAGGCGGGCAAGCAGCTCCTGTACGAGTTCTTTGATATCTTTGGGAGGCTGGCGGCCTGGAACCTGAAAAACCCAGGCTACGTCACGGAGGTGTACTTGATCCACTTACATGCCAGTGTCTACTCGCTCTTTCACCGCCTGTATGGCATGTACCCCTGCAACTTCGTCTCCTACCTGCGATCGCACTACTGCATGAAGGAGAACATGGAGACCTTCGAGGAGGTGGTCAAGCCAATGCTGGAGCACGTGCGGATACACCCCGAACTCGTGACTGGAACCAAGGACCACGAGCTGGACCCCACCAGGTGGAAGAGGTTTGAGATCCATGACATCGTCATCGAGTGTGCCAAAGTGTCCCTGGACCCGAAGGAGGCGTCCTGCGAGGAGGGCTACTCCACTATACCCGAGCACTTCTCCACGCACCTCCAGCACCGGCCGGCCGACTGCACCGCCAGCCCCTACGCTGACCTCCACAGCAGCTACGGGAGCACCTCCTCGACGCCCTTCTCCACGCCGCGCCAGGCCTTGCCTCCGCTCTCAGGGACCCAGCCCCCCAGCCGCCTGCCCGACCCCACCCAGGATGTCATCTGGAGCCCAGCCACCATGTGTGGGATGTCCACACCTCCATCATCCCGCGGCATCTCGCCCACCAATGCCCCCGCCGAGCTATCCCTCAGTGCCTCTCACTTCCCCGGCCGAGTTCACAGCACACCAGCTCCTGGGAAAGGGACTCCCTCGACCACACCAGCCACCGCCTCCCCGCCCCCCACTGCCACGGACGAGTTCGTTCAAGTCGCCCTGCCCCCCTGCACGACCAGCCCGCCCCGCAAGGACGGGAAACCTGAATCGTCGAAGCCCGGGCTGGTGAGACAGGAGCCGGTCCGAGAGGCGGAGAAGGGAGGCGCCGACGCGGCCCCCGGCAGAGGCGCCGCGAGCGAGAACATGACCGTGAGTCTGACCGAGCTGCCGATGTTCAtcaaggagctggagcagcagcagcacaggatGGAGAAAGAGCCGGAGGAAGATGCTATCACGGAGGAGCTGCTCCTGATTACCGAGGACCAGCGCCAGTCCCCGGGGCTGCGGGGCGGCTTCGACTCCCCCTTCTACCACACCACTGAGACCCTGACGGGCAACCAGAAGAAAGCCCTGCCCATGAGCGCGCTGGTGCCGGCGCCCGGCTGCACCCCCAACTCCGAGTCTCACCGCGCCGTGTCCACGCCGGACAAAGCCGTGCCGCTCGCGGTTGTGGAGGGCCAGGAGGCACCGTGCTTCTTCCAGCCAGTGTTCACGCCCATTGAGCATCCTGTGGCCCGGCACTTCGCCCGCAGCCCCTCGGCTCCTGCCCCCGGGGGGTCCACCCATGCGGGCCCGTGCGGCCTCTTCTCTCCCAGCCCCTGCAAGTCCCAGGCGCCACCCTACGAGGCCCTGTTCGACCTGGCGCTGCCCAAGGCCGCCGCGCTGTTTGTGGGCAGGAGGACGTCGGAGGCGCTGCACAGGTCGGTGGGGGAGCGGCCGGACGAGGAGGAGGGCGAGGGGGTGGTGTCCACGTCCCCCCTGGAGGTGCTGGACCGCCTCATACAGCAGGGTAGCGACGCCCACGACAAGGTGCTCAAGAGgTTACCTTTGCCAAGTAAGTCGGCTGACTGGACGCACTTTGGAGGCTCGGCGCCGCTGGACGAGCTGCACACCCTGCGCAGTCAGCTGCTCCTGCTCCACAGCCAGCTGCTGTTCGAGCGCTACAAGCGGGAGCAGCACGCCCTCCGCAACCGCCGCCTGCTGCGCCGCATCATCAATGCCACCGCACTGGAGGAGCAGAATGCCGCCATGaAGAACCAGCTGAACCTGCAGGAGGTGGACATCCAGTCTCTGAAGGAGAGCCTGCAGGTGGAGCAGCAGAGGTACCAGCAGCTGTGGGACGACCGGGAGATGGTGGTGACCCGTCTGCACAGCCAGATCCGGCAGCTGCAGCAGGGCCGGGACGAGTACTACACCAAGAACCAAGAGCTGCAGAGTAAGCTACAGGAGTGCCAGAAGAAGATGGGAGAGATGGAGGCAGAGCTGCAGAAAGCCAACAACAAAGTGTGCAACACGGGGCACCTGCTCAACCAGCTCTCGGTCAAGctgctgctgctgggtgAGGTCAACAGGCTGGCcatggaggagctgctgcactCCAGCCCAGACACCAGCAAGGAGGTGGACATGCTGCGGGCGTCCTACGGCAAGGAGCTGGAGAAGCTGCGGCAGAGCCTGGTGCAGCAGAGCCAGCGCCTGGAGGCGGCCCAGCACCGCATCGGCGAGCTAGAGTCCCAGCTTGCCAAGAAGGAGCACCTCATCAGACAGGTCACCCAGGTGCTGCAGACGGAGCTGCTGCAGCTGTACAGCCGTCTGGAGATGGAGCTCCCTTGTGAGGGGGCCGGGGCCGACATGGAGCCGTGCAGCCCCCTGGGCTCCAGggGGTCCGGCTCAGAGTCGACCGTGCCGGGGAACGTAGCCGCCCATGACGGCCCAGGCAGCGGTCCGGCCGACTCCCCCAAGGGCAACGGTAGCACTTTATCATCCGGGAAGCCCCCGGCCCCCCCGGGGTCCCGCGGCTCAGTCAACGGCAGCCGGGACCCCCCCCTCCTGCTGGAGCCCTCCCCGTCCCACTGCCCCCCGGCGCCCAGCGACGCCCCTCTCACTGTTGGCTCCTACCCCAGCGCCAAGAGCTTCCTGGGCATGCGGAACAACATGCTGTTCCGCAACAAGAGCGAGAGCCAGTGCGACGACGAGCCGCCGCGGCTGGCCGGTCTGTCCCAGACACTGAAGACCGAGCAGTGCGTGGAGCCAATGGCGGAGGGGGCGGCCGCCGTGGGGCCAACCTGGGGGCCCGCGGCCAAGGAGGGGCAGCCGGATGCCCAGCAGAGAGCCAACAACAGGCAGCAGCTGCGCATCATGGACTACAACGAAACGCACCAGGAGCACAGTTAGAGAGAGGACAGACGCCTGGCTCAGTGTTATTATTCTCATTTCTTCAGTGGACACAGGATTTGAGCTCCATTAACAACCCAGCAGAACGACTACGGGCCCCCCATCTGGTTGCCcaccctgttttttttctttgtttttgtgtgatttcCTCCCCCTACCGTGGCTGAGTCTCAGATGCTCGTGGGATCGGCTGAGTGGAGACAGGTCCCGGCTCGGGGGTCTTCCCAGTACGGTAACGCTGAGGGTGAGGGAGGGTCTCCAGGTGTCATGTGTTTGGAATATAAAGCGCCACAGTTTTTCTCCCATCTCACAGAAATGTTCAAATAACTAGAACTAAAAAGAactgctataaataacaaaccAGGACTAggctttcaaataaacaaagggCAAAACAACATGGCTGTCCTTAAGCAGCGACTTTATAAGACCGAAATAGATCTAGAGTAGGAACGCAGTCTGCAGCCTGTGTGTTGTGGTTTGGTGGGGTGACTGTAATCAGCGGCCACTGGTTCAGGTGTTTGCGGGGCAGTCGATCACACCTGTGCCATATTGGACTCCAGCTGCCTGCTGCGCCCTGCCAGGCGCTCCCATTCCTCTCTGGAAGGCGTGGGTGGGGGCTGTGGGTGGGGGTctcattgttttgtgtgttggaGTCATGCATATCCGGCAGCAccgggtggtggtggtgatggtggtggtgtttgAGTGACGTGACAATAAATCAAAGCTCCTGCAACCCAACCCCGGCATTTTTTTAGTTAGTTCGTTTTCATTTCctgtatttgattaatttgtattctttttttttttggcgccCCTCTTTCCCTCGGTCAGGTTTCTGTCAGAAGGGAAACGCAGAACGTGTCGCCCTTTAGCTCGAGCTGGTTTGACCCAGTCTCCTGCAAAGTGACCCACTGGTGCCGGACTGGAGATCCGAAATGGCTGTACCTCAGTAAGGTGGTCAGAGTTACAGTCACTGGGCTGGTGTCCCATTTCTTATCTTCTAGTGCCTCAGAATAATGCATATCACCCTCTTTAACGCTTATTTCGAATTTAAGATGAGTAGTGGGTATTGTGTAATAGGTTCCAGTGCCCTTCGGTTATCTCTTTCATGTGACAAATGTTACACCATCCATCCTGTGGCCCCCGGAATTTCAACATTGTGATGCGTTACTGTTCTTCAGTTGTGCAGCTCATGTAGAAACGTTATGAATAATAGGGCGATCCCTGTGCGTTTTTTTTGTGACACAAATGCAGCTTCATCTCAACGGTGAACTTGTTAGTGTCTTCCTCAGATCTTAGAGTAACCTGGGCGTTGTTTTAAAGAGGTCCAATCCAGGAAACTGGTCTTAGGACATGATGTCCACTATAACCTTGCCCCCCTGGCAGCGGGAAGAATCAATTCTGTGTGTTGACTCCCAACAAGGACCCAATAAGAGATTgtcacctttttgtttttaggtttttttgtCTGCCCTCTTGGCGTCCGACCAGTTTTAATATCTGTGCTGGGTTTGTGACCTGTGTCTGGATTCTGTAGGAGTTTTCTGAGGGAAAGCTTTGGACCCATGGTTCAGTCTAATTAACCTGTGCCATGTCTTCATTATACGGTCGTTTATAAGCTAATAAGTACAGACGCCTGTGTTTGTAGTGAACACTGAGAGAAAATCGGGAGATTGAGTGACAGGAAATGCCGCCATAAACCTGCAGTGACCTTAATATTCCCCCATATCTTCACAAGCTATTTGAATACGACTCAAATGGGGGTCTGTATGCGTTAAGCTCGTGCACTAAAGATGCACAACTGCTGGCACCACATTCTCATGGTGGTGTGTGTTACAAGTGACCGAAATCTCCCCACGTTTCCTTAGTCaaatcgtgtgtgtgtgtgtgtgtgtgtcttattgCCATCcttgcacaaaataattgagGAGAGgtgccgtgtctgtgtgtgtcgtCCCTCTGCCTCCTGCCATTTTtagtttctcattttgttttagaaaatccTTCTGGGGGGCGTTGTGTGGGGAACTCAAATTACAGAAAGGCACGGTGTTGTGGATTATCATGTTAAACTGCAGCTTTACATCCAGGACTTGTTTAAAttcattttggccactgttggTCTGTCCAAACTACACTGTTTCAGCGAGAGGTGGTCTTCTGCTGGGATTGAGCACTTTGGCAATGATCTTTAACAGTTGCTGGAAATTATCATAGTTTAATTGCCGAAGAATTAATATTTTCCATGAAAAGGCTCCAACTTTAAAGCTGGAGAAGCCCGTCTGTGGCTCAGACACGACCCTTCCGAAACGGTCACTGTAAAGTCTGGAGATCTCCTCGGATGGGCTTTATATTTGATAGGTTTGAGGAACCAGTGAagtattttcataattattgtaTAATCATTGGATGAAAGTtcagtttcttttattttatagctAGTACAAATCCTGTGGTCTGCTGAAAGTCTCTGCTGTTCTTCAGTCTGCCTTGCTATCATAAGCATGTACAACAATCCACTTTAAATGCCAATAATAGGAAATCCAGCATCCAAACAGACTCTACAGTATGGTACAATCCGAGCGAGAGGGGAAGGGAAGATCCGGTGGGACTCCTTTTTCGAGCAGAATGTTCTGAAAACCCGGAGAGAGAGTTCTTCAAAAGCAGTTGCTTGTGTTTAACTGTGAacgaaaaattaaaaaataaaataata

Function

GO: NA

KEGG:

id description
K07206 TSC1; tuberous sclerosis 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019927 True 6327 mRNA 0.57 22 2970844 2989870

Neighbor

gene id symbol gene type direction distance location
AMCG00019922 NA coding downstream 28209 2921041 ~ 2942635 (-)
AMCG00019923 NA coding downstream 61471 2884280 ~ 2909373 (-)
AMCG00019918 NA coding downstream 137438 2826323 ~ 2833406 (-)
AMCG00019919 stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899 coding downstream 145732 2811351 ~ 2825112 (-)
AMCG00019911 rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986 coding downstream 189540 2772569 ~ 2781304 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding upstream 44521 3034391 ~ 3054507 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding upstream 122225 3112095 ~ 3129430 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding upstream 168414 3158284 ~ 3165762 (-)
AMCG00019940 NA coding upstream 198787 3188657 ~ 3190995 (-)
AMCG00019943 NA coding upstream 204907 3194777 ~ 3201209 (-)
G59556 NA non-coding downstream 395174 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 749650 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 778297 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1308665 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1476871 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 500848 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 607335 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 650168 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 656169 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 681153 3671023 ~ 3675014 (-)
G59545 NA other downstream 463824 2494899 ~ 2507020 (-)
G59530 NA other downstream 490045 2454911 ~ 2480799 (-)
G59505 NA other downstream 643429 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 1384844 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 2398017 535831 ~ 572827 (-)
G59712 NA other upstream 41986 3031856 ~ 3034335 (-)
G59720 NA other upstream 117931 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 176367 3166237 ~ 3185965 (-)
G59806 NA other upstream 489912 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 2022574 5012444 ~ 5061512 (-)

Expression


Co-expression Network