AMCG00019928 (rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528)


Basic Information

Item Value
gene id AMCG00019928
gene name rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3034391 ~ 3054507 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019928
ATGTCGACggatgaatacaaaataactcCACAGGCTTCTGGAGTCCCAGGTCTTGAGAACTCGACCCAGGAGATTGGTGAGGAGGTAGAGGAGGGAGCCATATACACCATCACCCTCAGAAAGGTCCAGGTCCACCAGGCGGCCAGCAAGGGCCAGCGATGGCTGGGGGTGGAGACAGAGTCAGCTCTGAGCCTGTACGAGACGTGCAAGGTGCGCACCATCAAGGCGGGCACCCTGGAGAAGCTGGTGGAGTACATGGTGTCAGCATTCAGAGGCAACGACTCGACCTACGTCACCATCTTCCTGTGCACCTATCGCTCCTTCACCACCACCAAGCAAGTGCTGGACCTGCTGCTCAACAGGTACGCCAAACTGCACCACCAGTCCAGCGTCGAGGGTTCCAGACTGACGCACGATGACCGCACTGAGCTGAAGAAcacTATCTCCTCTATCCTGGGTGCCTGGCTGGACCAGTACTCGGAGGATTTCTGGAAGCCGCCGGAGTACTCCTGTCTGCGCCGCCTCATCTCCTACCTGCACCTCAATTTCCCCGGCTCGGACCTGGAGAGGAGGGCCTGCAACCTGCTGGCACAGTTCCACCGGCGGCAGCTCCGCGAGCCCGAGCAGGAGGTGCTGGACCACAGCGCCTGCACCTTCACCATGCTGGAGGAGAATGGCTACGACGACGACCGGCCCGACTTCCTGTCCTTCTCCCCCGCGGTGGTGGCCGAGCAGTTCACGCTGATGGACGCGGAGCTGTTTAAGAAGGTGGTGCCGTACCACTGCCTGGGCAGCATCTGGTCCCAGCGCGACAAGAAGGGCAAGGAGCACCTGGCGCCCACCATCCGCGCCACCGTCACCCAGTTCAATTGCGTCACCAACTGCGTCATTGCCACCTGCTTGAGCGACAAGGGGCTCAAGCCCACGCAGCGTGCCAAAGTGGTGGAGCGCTGGATCGAGGTGGCCAGGGAATGCCGGATCCTGAAGAACTTCTCCTCCCTGCGAGCGATCCTGTCAGCTCTGCAGTGCAACTCCATTCACAGGCTGAAGAAGACGTGGGACGAGGTCTCCAGGGAAAACTTCCGCATCTTTCACGAGCTGTCGGAGATCTTCTCAGACGAGAACAACCACTCCCTGAGCCGAGAGCTGCTCATCAAGGAGGGCACTTCGAAGTTCGCTACTCTGGAGATCAACCCCAAAAGGGCCCAGAAGAGGCATCAGCAACAGAGAGATCTGGGCGTGATGCAGGGCACCATCCCGTACCTGGGCACCTTCCTCACAGACCTGGTGATGATGGACACAGCCATGAAGGACTACCTGGATGGTGGATTAATAAACTTTGAAAAGAGGAGAAAGGAGTTCGAGGTCATCGCCCAGATCAAGCTCCTGCAGTTGGCCTGCAACAACTACAACTTCACTCAGGAGGGGCAGTTTGTGGAGTGGTTCTCTGGGGTGGACAGACTCACTGAGGCTGAGagCTACAGCCTGTCCTGCGAGATCGAGCCGCTGTCGGAGTCCGCCAGCAACACGCTGAAGGCCAAGAAGAACACGGGCATCATCAAGCGCTGGAGCGACCGGCAGCCCCCCAGCGCTGAGGCCAGCTGCAGCGCCGGCAGCTCCCACTCTAAGTCCTTCGAGCAGCTGCGCTACGGGCCCTTCCTGGGCGGGGGCAGCGGGGACGGCGGCGACTCGGTCAGCGTCACCTCGGCCGGCTCCAGCAGCTCCGACGTGGAAGAGATCAACATCAGCTTCATCTCCGACTCCCCGGAGTCCCACGAGAAGAAGttCTGGGAGTCCACGTCGCTGTCGTCGCTGGACACCTCGGGGATGGGCTCGGGCTCCAGCAGCGCCTCGTCGTCATCCATGTCCTCCACGCCGGTCAGCGCCTCCCGCTCGCACAAGCGCTCCGTGTCGGGCGTGTCCAGCTACTCGTCGCTGTCCCTGCCGCTCTACAACCAGCAAGTGGACGACTGCTGCATCATCCGCGTCAGCCTGGACGTGGACAATGGCAACATGTACAAGAGCATCCTgGTGACCAGTCAGGACAAGACGCCAGCGGTTATCAGGAAAGCCATGGTCAAACACAACCTGGACCGCGAGAGGCCGGAGGACTACGAGCTGCTGCAGAAGATCTCGGAGGAGAAAGAGCTGAAGATCCCAGACAACGCCAACGTCTTCTACGCCATGAACTCCTCAGCCAACTACGACTTCGTGTTGAAGAAGAGGGGCTTCCCCAAGGCCGGGCGTGCCAAGCACGTGGCCAGCTCCACCCTGCCCCGCATGAAGCAGAAAGGCCTGAAAATCGCCAAGGGCATCTTCTGAACACCCGGCCTCTGCCCCACCAACTGCCCCACCTGCCCCACCCGCCATCCCCCTTCCCTGCTgccagagaggagaggaatggCCGTCAGTAttacatgaacaaaaacaaactctgaCACTTAAAGAACAATGACAAAAAGACAGAAGGACCCTGTACAGACTGTGCAATACGGAAAGAGGTGTGCCTCACGGAGAGGCAAGCCGGAGAGCTCTTATTGTGTGCAGGGGCGCCATGTTTACAGGCCTTAGTGCCCAGCTGCCCATCTTTTTGGAGGGCAGGAACTAGGACCCTCATGCCTTTTCTGTGCCAGGTGTGAACTGATATTATTTGAGGACCCTTGGGAGGGTTTCCACGTGAAGGACTCGGCCGTCCCTGGAGTTCCCTGGGGAAGGGACAGTGGACATTACTCTGCCCACGAGAGCAGAGTCCCCAAGGTTGGTTCGGTAATGAGAGTCCAGGAAAAGGGGACGGGGCAACGTCCAGCCTGGCATCCAATAATCCTACTCCTCCCTCTGTGTGCGGCACTGACTCCGCACTGTCCCGCCCACCGACTTCGGTTTCGTTTCCCGAGCTCATCGGGAAAGAAGAGACTAGTTCCTCATAACACTAAACccccttttttttgtcttttgtaagcTCAAGAAACTCTATTTCAAACTCTGAAGACAAAGggttttgttttcgttttgttttttgtactggCCCACCCCAGCCaaagactgacagacagacctCCAAATGTGGACCTCTTGAGCTGGGCCTTACTGCTAAAGGGATTCCCCTTTTCCACATCAAAACCTGTCCCTTGTCCCACACAAGGATGGCTGACACTGATGTATAAAAATTTGCGGGACACCGTTGGGTGgataaaaaaggacaaaattCCCACCGGAGGAGGTGTCCCCGTCCTTTACAAATGAGTTAAACTGACACATTTACATCCACTACTTTTGTACAGTAAAGCAAGGGCATTATAACGAatcaatttttcttttctttttggttttgctAGACTCTTTTCCAAGTGGTGCTAACAGATGTTTGAAATCTGCTCATCCCGGTTAGAATCTCAGAGTCCTGTAGCGACGGTTTGAGTCGCattgcccccccaccaccacacacacactgaccacatTGGACAGGTCAGTGACCCCCTGTCGACCCCAGCAGTTTTTCCCAACACAACAGAAGAGAActgacttttttaaatgttgtctttCGTGCTTTCCAATGACTGACAGTGGGCAGAGTGAGCCAGGAGGCGTCCGCAGCGAGTCCAATGAGGACAGTCCAGGGAATCGAGCTCTGCCCGGGGCGTGGTTTCCCTCCTCTGGACGCTAGAGGGAGCCCCTCGCAGGCCTCGGTGATTTCCACACCAGCGAGAATTCCCGTCATCCTTCCTCGGGAGGAACCGGGCGCGGTGGCGGACATTTCCAGAACTGTCTGAAGGACTTCTGCTCAAATGCTGGAACTGCCTGCGACGAGGAGAGCAGCGCCCAAACGCACCCCACTGTCTTACTCTACGGTGAGAGGGAACGGGATCTGTTCgtagggttttgttttgggttttcttGCCCAACATGTATAGTTTTAAATGATGAATAAGGACTGTAGACGTACCCTGTTCACAGTTCCAGCCACTGCCTCCCCTTCAAGACTGTGACATGTTTAATGACCACACCTCCTCCCAGAACCCCCCACTCTGCTTTTCTGCAGCCCTCAGGAAAAATGCCTGTGAGAGTCGGGCAGGACACTAATAATCTGGACCTTGTCAAGATAAAACAACAGACTGTAAATGTGCTAAATCAGTTTAGGGGGAGAAACTGGAAACTGAACATGaaagaaacactgaaacacGAGACACTGAAAGAGGCCTCTGTTCATCGTGCTGAAAGCCATGTCCTCCCTTCATCTCCAATACAGGCAAAGGGGGCGTGTGGGACGTGGGGCTCTGGGGTTACTTTTACATGTGCCAAAGACCAGGGCGAGGGGGTGGGCAGCAGGTGCGCGTgtttatgtgtgagtgtgtg

Function

symbol description
rgl4 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction. Predicted to be located in cytoplasmic vesicle.
ralgds Enables GTPase regulator activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction. Located in brush border; cytosol; and nucleus.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ral guanine nucleotide dissociation stimulator

GO: NA

KEGG:

id description
K08732 RALGDS; ral guanine nucleotide dissociation stimulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019928 True 4353 mRNA 0.56 18 3034391 3054507

Neighbor

gene id symbol gene type direction distance location
AMCG00019927 NA coding downstream 44521 2970844 ~ 2989870 (-)
AMCG00019922 NA coding downstream 91756 2921041 ~ 2942635 (-)
AMCG00019923 NA coding downstream 125018 2884280 ~ 2909373 (-)
AMCG00019918 NA coding downstream 200985 2826323 ~ 2833406 (-)
AMCG00019919 stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899 coding downstream 209279 2811351 ~ 2825112 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding upstream 57588 3112095 ~ 3129430 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding upstream 103777 3158284 ~ 3165762 (-)
AMCG00019940 NA coding upstream 134150 3188657 ~ 3190995 (-)
AMCG00019943 NA coding upstream 140270 3194777 ~ 3201209 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding upstream 153380 3207887 ~ 3211163 (-)
G59556 NA non-coding downstream 458721 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 813197 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 841844 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1372212 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1540418 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 436211 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 542698 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 585531 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 591532 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 616516 3671023 ~ 3675014 (-)
G59712 NA other downstream 56 3031856 ~ 3034335 (-)
G59545 NA other downstream 527371 2494899 ~ 2507020 (-)
G59530 NA other downstream 553592 2454911 ~ 2480799 (-)
G59505 NA other downstream 706976 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 1448391 1584919 ~ 1586000 (-)
G59720 NA other upstream 53294 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 111730 3166237 ~ 3185965 (-)
G59806 NA other upstream 425275 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1957937 5012444 ~ 5061512 (-)
G60118 NA other upstream 2209407 5263914 ~ 5265925 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_02007718_02025670 NA coding CI01000010 null 2007507 ~ 2026254 (+)