AMCG00019933 (tbc1d13,LOC106562828,LOC106570453)


Basic Information

Item Value
gene id AMCG00019933
gene name tbc1d13,LOC106562828,LOC106570453
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3112095 ~ 3129430 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019933
CCCAGTTCCTGCTGCTCGGTGAGGAAGTCAACATGTCGAGTTCATACAGGAGCAGGATTCAGGAGTTCAACGCCGCGCTTGGCGAGGAGAAGATCAGCCTCCATGCGCTGAGGGAGCTCTGTTTCAGCGGCATCCCTTTTGAAGGGGGCATTCGATCGCTCTGTTGGAAGATCCTGTTGAATTATCTTCCCCTGGAGCAGGCGATCTGGGACTCCTTCCTGAAGAAGCAGAGGGAGGTCTACGCCCAGTTCCTAAAGGAGATGATCATCCAGCCTGGAATCGCCAAGGCCAACATGGGGCTGTCCAGAGAAGACGTGACTATGGAGGACCACCCACTGAATCCCAACCCCGACAGCCGGTGGAACAACTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGATAAGGATGTCAGGCGGCTGTATCCAGACATGGCATTCTTCCAGCGGCCCACAGATTACCCCTGCCTGCTCATCCTGGACCCCCAGAACGACTACGAGACTCTGCGGCGCCGCGTGGAGCAGACCACCCTGAAGTCCCAGACCGTGGACCGGAACCGCAGCGGAGTCACCAACGTGGGCTCCCCGGGGAAGTCGCAGAATCTGTACCCCTCCAACGAGTATGAGGTGCTGCCCAACGGCTGCGAGGCGCACTGGGAGGTGGTGGAGCGCATCCTGTTCATCTACGCCAAGCTGAACCCGGGCATCGCCTACGTGCAGGGCATGAACGAGATCGTGGGGCCCATTTACTACACCTTCGCCTCCGACCCCAACAGTGAGTGGAAGGAGCACGCTGAGGCCGACACCTTCTTCTGCTTCACCAACCTTATGTCGGAGAACCGGGACAACTTCATCAAGAGCCTGGACGACTCCCAGTGCGGCATCACCTACAAGATGGAGAGCGTGTACTCCACCCTGAAGGAAAAGGACATGGAGCTCTACCTCAAGCTGCAAGAGCAGAACATCAAGCCGCAGTACTTCACGTTCCGCTGGCTCACGCTGCTGCTGTCGCAGGAGTTCCTGCTGCCCGACGTCATCCGCATCTGGGACACGCTGTTCTCGGACAAGGACCGCTTCGACTTCCTGATCCTGGTCTGCTGCGCCATGCTCATTCTGATTCGGGATCAGCTGCTGGCAGGAGACTTCACGATCAACATGAGGCTGCTGCAGGATTACCCCATCACCGACGTCCACCACATCCTAGCGAAGGCCAAGGAGCTTCAGGACGGGGCGTAGCCAACGGCACAACAGCACCCTGGGGCAGAACGGCCAGCCCGGCGACGACACGATCGGCAGCGCTCGCACAGTGCATCATGGGAGGAGAGGTCGCCACATTGCTGTGCATTGTGGGAGCTCCCCCCCACCACGGGGCCCAGCGCGCCTCTGCCCCTTCCCTTCGCACCGAGACGGTATTCTTATcaagctatttatttttgcactgaAGACttgaaaccaaaaaaacacctatcgcaaaaaatacagaaaaaaaagtctgaaattaCACAATATGGAAGAAAACACTCCAAGACTGTTATTTTCTAAATCCTAACAGGGTTCCTCTGGGCTGTTCTTTTAATAGAGTTTTAAcctctttctttttatgattttaatgttttgttttttaactctTCGTATTAAACcgatttcagttgttttttggCGAGCTAGTTGACTGCCAGCATTAACGCCCCTGGTTTGATTTACACGGCTCCTGCCAGGAGAGCGGTTCTCTGAGGCTTGAATTCTCCTCGGGTTTTAGCCATTGAGCTCAAATTGACCTTACTCTGTCCCCCGGTGTCTCCAGTAGTGGCAGAGCAAGGACTCAACTCGTCTTAATGTTTATTAGAAGCTACAGTCAATGCTGCACCCTTTACAGTACGCACCAAGTCATCTCAGTTGTGGCTCTTATTAAGCTGTCCTGTTATTAACCAATCTGATTCCCTTAGTCTGTTATCTTAGTGATGTCGTGCtcgtgagtgagtgagtgtgggtgtgctgggattgtttttatttacccCTTCTTTTTCTCAACGGAGTTCAGCCTAGGTTTATCTAGCAGATCCTAACTGTTTACCCAGAACCCGGTGTGTGGACCAGACCTCAGTTCTGCCGGGCAGGCTGGGGACGTTGTGCGAGTTCTGTGATAGAAGGATTTTTGTTGtatgtgtggttttgtttaccTGAATTTCTAGGCTCCCTCTAGTGGTGGGGAAGGAGAAAGAGCGCTCTCATCAATACGGTGATATTGGCACTTCCTTCTCTCATCTACTTAATAGTCAGGGTCTCCCCTCACAGATGCCTCCCTTGCTtttatatagacatatataaaAGTTGTCCTTAAATGCCTCGTAACAGACCTGTACAGGGACGGACTCGGGATCATGCTTTGAAAATGCTACAGTTAGGCTTAGTACTTGCTCAATATTCACTTCTGCCGTCCCTACCTGCCTCTGAAGGTGTAATTTGCTTTCTTAATCCCTGGCCACTTCTCAATTCCTTCCCATATGAAGGACGGTCTTCACACTGCAATCTGGAGAGTCATCTTGTTAGTCAAGTTGGTTTTATACCCagatcttttatattttatcagtgGGCCCATGGGAGGCAAGTAGTAGTGGTTCTGGAAGTACAGGAGGAAAGTAGAGGTAGTACAGGTAGAAAGCCTAGCTACAGTTCGGATTAGTAAATTTGCAAAGCATGATCTGATGTTCTTTGCCCTTATGGGTAATTTACAGAAAacgtatatttttttataaagataCATCTCTCTTTTTAGGCACACTGTAGATACTGTTGAACAAGTTGTATTGGGAGCCTGTTACCAGGAGAGCTACACAACTGGTACTACAGCTGGGAAGAGTCACCATGTGGGCAGGAAGTGCCATGGGGGGAATCCAATATCTAACACTCCTTCTCTGCTTCAACAAAATTAATTGTGGGAGCCCACTGTCTCCTGTTGTTGTCCGAGGCTCACTCACGCCAACCTCCTTCGGATTGCCTGGGAGGAACCGGCGTGTGACCGCAGTCGTAAAGCCTTCGCACAGCAGTGTCTCCCACGCACCGCACGCGTGCCAAGAATGTCAATCTACCCGCCTCGACAACATTGTCTTGTTTTGGTCGTTCAGTTTGCGTGTAATATCTGTCGAATGAGTTGTTCGGAAGCAGTGGCCTTAGTCAAAGATGTCACATTGTGCAGTTGGGCAGCGTTGATGATTCTGAAGACTTCCTCCTTCTCTTTGACCTGCCACCATATCCTTTAGCTAGAGCCTGGTTAAGTCCTTATCCAGACAGATCTGAATCCCAGCATCTCAAGAAGCTTTGTTCTTGCACAGTCTTACAGTACAAAACAATCGAGTAACAGAAGCATTACAGTCGGGAACTCTTTTGTAAAGCCAGTGTGTCTTAATGCCTATACATCTTATTCGGTCATGCTTTCAGTGACACTCGCCACTAAATCAGGTCTGCACCCTgcctttgctgttttttttttttgttgttttaatgtttgtgtgcgtgtaATTCTCTGTTGTTTTTGCTCATGTTTCTAGTTTCTGAGCCCGAGTACAAAGCTGATCTGCAATTAAACCTCTTTCTAAAAGTCAAAGCTGAGTCAGGAAGTGCAGAGGGGAAGCAAATCAGTGTCGCACCTGAACTGAAGAGGATTTCTGTGTCACACTCATTTCCTTCCCAGAGACACGGCTGAAGCTTCTCAAGACCTTTTACTAAAAGCATATAAGACACCGTGTTAAATCTAGGAACTAAGCACTGATAACACAAGAGATGGaaatacagcacacacagtAAGATATGCAAAAAAAAGTATCTACAGGTCATATCTGTATGGCATTATATATCCCAGATGGGAATTTCTCTTCAGCTTCTTTCACACTAGCACACCGTCCTGTGTAGTTTCATGTGACCCCACCTCCTTCCCCTGCCGTCATCCCGAAAGTGAAgtaaataatttgatgtttgcaAGCAGATGGTGCGGAGAAGCCTTGCGGTCACTTTCAGTTGACCGTGGCTTTGAAAAGCGGGCCGAGCACTAGGCCTGGAATAAGTTTGCACAGTGTGAATGAAATCTACTCCTTACACTAGATAGTTGTATTGTGTGTTATCCGTGTTTTTGATGGACTTTTCCCGAACATTGGAGAACcgtaggatttttttttttcttgtattgttAAAGCTATGACATTATGGTTTGTATGATTGCTTCTGACTAAGAAGGCGTTTATGAGGGATCTGTCTCTTACATATTTGCTTTGATCCATAGATGTAGATGTTGGTTTTATAGCTGCTGCTGCACTCAAGTATTATCATGGTTTGTCCTAGTTCTCCAGCCCTGTTATGAAAGATTTAAGTGCTATAACTGGCTGAGTTCTAAAGAATGTCTCTATTTCAGGTTTAAAGCCCTTTAGATAAGCGCAGTGAAATTTAtgtgctgtgtttttcattCGGCATCATCGTAAGATACCCTAGAAGCATCTGTTGTCC

Function

symbol description
tbc1d13 Orthologous to human TBC1D13 (TBC1 domain family member 13).

NR:

description
PREDICTED: TBC1 domain family member 13 isoform X2

GO:      GO:0005097,GO:0032851

KEGG:

id description
K24796 TBC1D13; TBC1 domain family member 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019933 True 4496 mRNA 0.48 12 3112095 3129430

Neighbor

gene id symbol gene type direction distance location
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding downstream 57588 3034391 ~ 3054507 (-)
AMCG00019927 NA coding downstream 122225 2970844 ~ 2989870 (-)
AMCG00019922 NA coding downstream 169460 2921041 ~ 2942635 (-)
AMCG00019923 NA coding downstream 202722 2884280 ~ 2909373 (-)
AMCG00019918 NA coding downstream 278689 2826323 ~ 2833406 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding upstream 28854 3158284 ~ 3165762 (-)
AMCG00019940 NA coding upstream 59227 3188657 ~ 3190995 (-)
AMCG00019943 NA coding upstream 65347 3194777 ~ 3201209 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding upstream 78457 3207887 ~ 3211163 (-)
AMCG00019938 prrx1 coding upstream 125782 3255212 ~ 3257837 (-)
G59556 NA non-coding downstream 536425 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 890901 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 919548 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1449916 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1618122 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 361288 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 467775 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 510608 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 516609 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 541593 3671023 ~ 3675014 (-)
G59720 NA other downstream 748 3107801 ~ 3111347 (-)
G59712 NA other downstream 77760 3031856 ~ 3034335 (-)
G59545 NA other downstream 605075 2494899 ~ 2507020 (-)
G59530 NA other downstream 631296 2454911 ~ 2480799 (-)
G59505 NA other downstream 784680 2324288 ~ 2327415 (-)
AMCG00019942 NA other upstream 36807 3166237 ~ 3185965 (-)
G59806 NA other upstream 350352 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1883014 5012444 ~ 5061512 (-)
G60118 NA other upstream 2134484 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2147232 5276662 ~ 5278291 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000211_00042408_00046095 TBC1D13 coding CI01000211 null 42408 ~ 47110 (+)