AMCG00019938 (prrx1)


Basic Information

Item Value
gene id AMCG00019938
gene name prrx1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3255212 ~ 3257837 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019938
GGAGCCAGCCTGATCTCTAGCCCTCCCAAAGCAGACCGCCTGACAaaccctcctctctcccccgtCTCAGCAGAAGGCCTGAACTCCGACCAGAGCCTGACAAAGCGGAGGAAGAAGGAGCGGCGCAGTCGGACCACCTTTAACAGCAGTCAGCTGCAGGCGCTGGAGCGGGTGTTCGAGCGCACACACTACCCCGACGCCTTCGTCCGAGAGGAGCTGGCACGCAGGGTGAACCTCAGCGAGGCCCGAGTCCAGGTGTGGTTCCAGAACAGACGAGCCAAGTTCCGGCGGAACGAGAGGGCCGTTCTGGCCAGTCGCTCGGCCAACCTCCTCAAGTCCTACAGCCCCGACGTGGTCATAGAGCAGCCCGTGGCCCCCCGGCCCGCGCCCCTCAGCTCCGACTATCTCTCCTGGTCCCCAGCCGCACCTTACAGGTACAACACTCAACACCACGGCTCCAGGGGCCCACACACCGTGTCCTCGTACAGCTCGTCCAGCACGCCCACTGCGGGTCAGGGGGTCAACATGGCCAACAGCATCGCCAGCCTGAGGCTAAAGGCCAAAGAGTACAGTATGCACCAGAGCCAGGTGCCCACCGCGAACTGA

Function

symbol description
prrx1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in positive regulation of DNA repair by transcription from RNA polymerase II promoter. Located in cytosol and nucleoplasm. Implicated in agnathia-otocephaly complex.

NR:

description
paired mesoderm homeobox protein 1 isoform X2

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09329 PRRX, PMX; paired mesoderm homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019938 True 606 mRNA 0.64 3 3255212 3257837

Neighbor

gene id symbol gene type direction distance location
AMCG00019941 cunh9orf78,LOC107093874 coding downstream 44049 3207887 ~ 3211163 (-)
AMCG00019943 NA coding downstream 54003 3194777 ~ 3201209 (-)
AMCG00019940 NA coding downstream 64217 3188657 ~ 3190995 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding downstream 89450 3158284 ~ 3165762 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding downstream 125782 3112095 ~ 3129430 (-)
AMCG00019945 garnl3,LOC102797662 coding upstream 65942 3323779 ~ 3327751 (-)
AMCG00019944 NA coding upstream 82965 3340802 ~ 3379597 (-)
AMCG00019947 NA coding upstream 238439 3496276 ~ 3497746 (-)
AMCG00019946 NA coding upstream 265451 3523288 ~ 3529636 (-)
AMCG00019950 NA coding upstream 417270 3675107 ~ 3706097 (-)
G59556 NA non-coding downstream 679542 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 1034018 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1062665 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1593033 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1761239 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 232881 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 339368 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 382201 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 388202 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 413186 3671023 ~ 3675014 (-)
AMCG00019942 NA other downstream 69247 3166237 ~ 3185965 (-)
G59720 NA other downstream 143865 3107801 ~ 3111347 (-)
G59712 NA other downstream 220877 3031856 ~ 3034335 (-)
G59545 NA other downstream 748192 2494899 ~ 2507020 (-)
G59530 NA other downstream 774413 2454911 ~ 2480799 (-)
G59806 NA other upstream 221945 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1754607 5012444 ~ 5061512 (-)
G60118 NA other upstream 2006077 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2018825 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 2033753 5291590 ~ 5292673 (-)

Expression


Co-expression Network