AMCG00019939 (zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407)


Basic Information

Item Value
gene id AMCG00019939
gene name zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3158284 ~ 3165762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019939
GTCCAATCAGTCGCTTTCCATGCCGGATGTCGTCCTACAACACCCGGAAGTGCATTCAGCGTGGTTGTTTAAAGATGTCGGAAACTTCAAATTTCGGAAAGCACAAACTGCAGCCCAACGATGGCGACCAGAAAATCGTTTGGAAGAAGTGGAAAGCAGGGAAAAAAGAGGAGAAGAAGCAAATCCGAGAGCAGAAGCTGATTAAGAAGCTCGAGAAGCAGAAGTTGAaagaagagcagcagcagcaagaactgcagcagcagcaggagagaagaaagaaagGCCGCCACTACACGGTGAGCATCGCCTTGCCCGGCTCGGTGCTGGACAACGCCCAGTCCCCCGAGCTGCGCACCTACCTGGCCGGACAGATCGCCCGAGCCTGCGCCGTCTTCTGCGTCGACGAAGTGGTGGTGTTTGACGAGGAGGACCAAGATGCAAAGAGCGTGGAAGGTGAATTCACAGGGATTGGGAAGAAGGGGCAGGCCTGCGTGCAGCTCGCCCGTATCCTGCAGTACCTCGAGTGTCCGCAGTATCTGCGCAAATCTTTCTTTCCGAAGCATCAAGATCTGCAGTTTGCCGGGTTATTGAACCCCCTGGACAGCCCCCACCACATGCGCATGGATGACGAGTCCGAGTTTCGGGAGGGTGTGGTGCTGGACCGGCCGAGCAAGCCGGGGAAGGGATCTTTCGTCAACTGCGGAATGAGAAAGGAGGTGCGGATAGACCGGCGGCTGCAGGCCGGTCTCCGAGTCACGGTGCGTCTCCACAGCAGCCAGAACCCAGatGGCAAAGTGTACAAAGGGGAGGTGGTGGCGCCTCATCTCCCTCGAACCGAGGCGGGGCTGTACTGGGGCTACAGTGTGCGCCTGGCCTCGTGCCTCAGTAACGTGTTTGCCGAATGCCCTCATAAAGAAGGCTACGATCTGACGATTGGCACGTCGGAGAAGGGAAGCAGTGTGGACAGCGTCACTTTGTCCCCTTTTAAGCATGTGCTGGTCGTGTTCGGGGGGCTGCAGGGCTTGGAAGCCAGCGTGGACACGGACCAGAACTTAAACGTCACCGACCCGAGTGTGTTGTTTGACCTGTATCTCAACACCTGTCCGACGCAGGGCAGCCGGACCATACGCACCGAGGAAGCCATCTTGATTTCCCTCTCTGGCTTGAGACCGAAAGTTGCGGCCGCTTTTCAGGACTCGTCTGCAGGATGACGGCTGCGCAGAACACTACTCCAGCCAGCGTGTCCAGAACGACCGATCAGAGGTGGATTTGTTCTCAAGACTTTCCCAGGCCTGTCACAGTGACACCAGGAGCCCCTACAAGAATATTGCTTTTGTCTATAATTAGCTTATTCTTATTTACCAAACTGTCTGAGACCTTCTTCAGAAACTGGTGATGTTCGGGTGACTAAAAGGTGCTCAGCGCTATATTTATACTCCCACAGACTGATTTTAAAGGAACACCAACTCCGACACCTTACCCTGACCAGATGCTGATTGTATCTCTGATTGCTGATTGTATCTCACAACTGAAGTATGATCATAATGAAATGTGTACTGGACTACATTGAAAGgttgcatttatttgtaatctgccaagaagaatcGATGCCAAATTGATTTCCTGATTGCAATGCGTTTTGATTCATAGAAATGACAAATTCATATTAGATAAGAGCTACATACTTGCAAgcacaaccaaaacaaatgtttcccCAGTTACATTGTATAACCCACAGTGTGGTGCTGTATCTGGATACTAattgtgtgcgtctgtgtgtatacatgtacaCAGATACTGCTCCAATTAGTTGCAGGTTTTTATAGATGCGCACACAGCTTTTTGAGagtttattataaaattaaaacctacatttttaaaaatgcattgccTTGAACAtgattttcaataatattaaattagttAACTTAAGTCCTTGAGATTCAGGAATTCTAAattccattttcaaattaaattcaaatttacaataaGAGAAACATTGACAGGTTTAAAAATTCACATCATATAATGCACACGTGACCACAGTTGGCATTTGACAGCCCTTTTtttgtgcatatatttaaaaatatgtcatAAGAACCTAAAAGTTCACAGACAAGAAGAGGCCATTTGACACATCGCACGCCCGGGGCCCCGCTGGCTCATGTGGAGCCCGCAGTGATGGCCCGCAGGCTGTTAGTCTTCTTCATGATGTTGGGCACGAAGAGCAGGCCGGAGGCTCGTTCGATGCTCTCGATGGGGACCAGGAACGATTCCAGGGGCATCTTCTCGCTCACGGGTGCGTTGGGCATCAGGTACGGCCGCAGCTCCACCTCCCCCCTCCGGTTCTCCAGAATGACCACCTTGAAGAAGTGCGTGGGGACGGCCACATGGTTTTTCCCCAGAACTTGGTATTTCACATACATCTTCCCATCCGGCTCCTGTCTGGGCAGGTACAGGGGCCCCGTGCACACGAACACATTGTCATAGTGCTGAGGTAGTTTCCGGCAGTACTGCTCCAAGTTATTCCAGGCATTTTGGTTTAAATTCGGATTCTGCGGCGCCACGTTGCTGAGGTAGAAGGTCTCGTCCATCGCCCTCTGGCTCCACTTGTGGTTGGCGGCGGCGGCCAGGTGGCCCCTGTCGAAGCCGCTGCCGCGGTAGTCCGCGCTGCTGGCCCGGTGGTACTCGTGCACCGAGTCGTCCTCCTTAAAGTCGCTGTTTCTCCTGTCGGCGGCGCCTCTCAGCGTCCGCTCGCTCAGCTGCTCCAGCACCCACTGCGCCGTCCTGGTCCTGGGCTCGTAGCAAACCACGTAGGACTCCCGGGCCTTGATGTTGGACAGGGACGGGAAGCCGTACTTCATGATGGCCGTGGCTCTGGATGTGCCGACCTGATCCGCCTGGTAGCGGGCGAGGTCTGCGGCGGCGGCCACGCTGGGGATGGGGATGACCGGAGCTCGGCGGAGGACGCCGGGCAGCTGCCCTTGGCTCTGCTGCCTCTCCGGACTCGCCGCCATCAACGAGGCGCCGATGGCCGCCCCAGCAGCCAAGGACACGGCGCCCACAGCCCACCTCGACCGCACGATGCGGTGCATCGCTTACTATTGACGGAGCTGCAACCCCAGATCTCAGCCCGTCACCGGACTTCAGCGCCGAGCGGACCGGCCCGGAGCTCCGAGGAGGCTGTTCTAGAGTCGCGCTATTGTTGCGCAATGTCccaggtctgcgcagatctgcagaagcTCAGTGATCTCATACGAGGAGgcgcgcagatctgcgcaacaCCAGCGCATGTACCGGCGAGTTCATACAGAGGCGCACCTGAGTGACGCAGACCAATGACGTTTCATTTGGACTTAAAGGGCCATGGCACATTTTTACTCAACGAAAAGTGATTGTAAGTCGGTG

Function

NR:

description
PREDICTED: putative methyltransferase C9orf114

GO: NA

KEGG:

id description
K09142 SPOUT1; methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019939 True 3408 mRNA 0.53 14 3158284 3165762

Neighbor

gene id symbol gene type direction distance location
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding downstream 28854 3112095 ~ 3129430 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding downstream 103777 3034391 ~ 3054507 (-)
AMCG00019927 NA coding downstream 168414 2970844 ~ 2989870 (-)
AMCG00019922 NA coding downstream 215649 2921041 ~ 2942635 (-)
AMCG00019923 NA coding downstream 248911 2884280 ~ 2909373 (-)
AMCG00019940 NA coding upstream 22895 3188657 ~ 3190995 (-)
AMCG00019943 NA coding upstream 29015 3194777 ~ 3201209 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding upstream 42125 3207887 ~ 3211163 (-)
AMCG00019938 prrx1 coding upstream 89450 3255212 ~ 3257837 (-)
AMCG00019945 garnl3,LOC102797662 coding upstream 158017 3323779 ~ 3327751 (-)
G59556 NA non-coding downstream 582614 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 937090 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 965737 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1496105 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1664311 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 324956 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 431443 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 474276 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 480277 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 505261 3671023 ~ 3675014 (-)
G59720 NA other downstream 46937 3107801 ~ 3111347 (-)
G59712 NA other downstream 123949 3031856 ~ 3034335 (-)
G59545 NA other downstream 651264 2494899 ~ 2507020 (-)
G59530 NA other downstream 677485 2454911 ~ 2480799 (-)
G59505 NA other downstream 830869 2324288 ~ 2327415 (-)
AMCG00019942 NA other upstream 475 3166237 ~ 3185965 (-)
G59806 NA other upstream 314020 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1846682 5012444 ~ 5061512 (-)
G60118 NA other upstream 2098152 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2110900 5276662 ~ 5278291 (-)

Expression


Co-expression Network