AMCG00019940


Basic Information

Item Value
gene id AMCG00019940
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3188657 ~ 3190995 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019940
ATGGCGAGTCTTGCTTCAAAGGACTCTTATCTTCAGAAATTGGGGAGCAAAGTTTGTGCGTCGCAGAGCCAGGAGCCTCGGAAAAGGCCTTTTGAGAAGAAGCCCGTGGTCAACACCTCAACCCAAGTGCACAGCAAGGGGCGGACAGGGGTGCAGGAGGGAGCCAAAGCGAAGCCCGAGAGTGGCTTAACTGTCAACAAGCATCAGGGGTCCAAAGGTGCAAAGACGACGACATCCAGCTCTTTTTATACTGTGGATATTCTGCGTCAAAGACTGCATGAGAAGATTGAGGAGAAACGTGGCAATGTGAAGTCCCAGGGGCTGTCGGCCGAGGAGCGGGAGCGGAAGCGCGCGCGCCGGAAACAGGAGAGGGAGCGCAAGAAGCGCAAGAGGAAGGAGATCCGCAAGAGGAAGCTGGCAGAGGAAGCGGGCGAGGGCCAGccagaggaaaagaaagaggacGAGGATGGAGCCCAAGCCAAGGATCCTGCTGGAGCCACGCCCAGAGAGGAGAGCACCCTGGTCTTCAACAAGGTGGACGTGAGCGCGGACTACGTGGACAAGGagcagcagaagaaggagaagaaaaagaaagtgaaggGCAACATCACGCCGCTGACCGGGAAGAACTACAAGCAGCTCCTTAGTCGGCTGGAGGCCAGGACCGCCAAGCTGGAGGACCTGAGGAGCAAGGACATGGGCAAGGCcaaggagctggaggagaagaTGAAGTGGACTAACGTGCTGTACAAGGCTGAGGGCCTGAAGATCAAGGACAACGAGGAGCTCCTGCGTGCCTCCCTGAAGCGGAAGGAGAAGAAGCGCACCCAGAGGAAGAAAAACTGGGGGGAGCGCAGTGAGCACGTGATGGAGAAGATGCAGCACAGGCAGGACAAGCGCCGCAAGAACCTCCAGAGGCAGAAGAGCAGGAAGGCAGAGAATCGCAAGAACAAAGCCCGTAAGAAGGGGCGCGTGTTACCCGAGGACCTGAAGTAA

Function

GO:

id name namespace
GO:0034708 methyltransferase complex cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019940 True 996 mRNA 0.57 4 3188657 3190995

Neighbor

gene id symbol gene type direction distance location
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding downstream 22895 3158284 ~ 3165762 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding downstream 59227 3112095 ~ 3129430 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding downstream 134150 3034391 ~ 3054507 (-)
AMCG00019927 NA coding downstream 198787 2970844 ~ 2989870 (-)
AMCG00019922 NA coding downstream 246022 2921041 ~ 2942635 (-)
AMCG00019943 NA coding upstream 3782 3194777 ~ 3201209 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding upstream 16892 3207887 ~ 3211163 (-)
AMCG00019938 prrx1 coding upstream 64217 3255212 ~ 3257837 (-)
AMCG00019945 garnl3,LOC102797662 coding upstream 132784 3323779 ~ 3327751 (-)
AMCG00019944 NA coding upstream 149807 3340802 ~ 3379597 (-)
G59556 NA non-coding downstream 612987 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 967463 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 996110 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1526478 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1694684 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 299723 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 406210 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 449043 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 455044 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 480028 3671023 ~ 3675014 (-)
AMCG00019942 NA other downstream 2692 3166237 ~ 3185965 (-)
G59720 NA other downstream 77310 3107801 ~ 3111347 (-)
G59712 NA other downstream 154322 3031856 ~ 3034335 (-)
G59545 NA other downstream 681637 2494899 ~ 2507020 (-)
G59530 NA other downstream 707858 2454911 ~ 2480799 (-)
G59806 NA other upstream 288787 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1821449 5012444 ~ 5061512 (-)
G60118 NA other upstream 2072919 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2085667 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 2100595 5291590 ~ 5292673 (-)

Expression


Co-expression Network