AMCG00019941 (cunh9orf78,LOC107093874)


Basic Information

Item Value
gene id AMCG00019941
gene name cunh9orf78,LOC107093874
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3207887 ~ 3211163 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019941
ATGCCTTCTAACAAAAACTTCAGAAGACGGAGAGCAGATTCAGACGATGAAGAAGACGAAGAGACGACTGCAGAAGTCAGATCTAAACTGGATGAAGCCAAGGAGGTTCAGAGTCTCAGGAAAAGGCAGACTGGCGTGAGTGTGACGGCATTGTTGGTGGGTGAGAAGAGGCCGATTGACGCGGATATCGAGGATGATCCGTTTAAATTGAAGACGGGAGGCGTTGTGGAtatgaagaaaattaaagacCGGAACAGAGACATGACAGAAGAGGAGACCGACCTGAATCTGGGGACATCTTTCTCGGCGGAGACGAATCGTCGAGATGAAGATGCTGACATGATGAAGTACATTGAAACCgaactgaagaagaagaaggggcAGGTGGAGGCCGAGGAGCAGAAGGTGAAGGTGAAGAACGCGGAGGACCTCCTGTACGAGCTCCCGGAGAACATCAACGTGTCGTCAGCCAAGAAGACCGAGGAGATGCTGTCCAACCAGATGCTTAGTGGCATTCCAGAGATAAAGAACATAATTTTCACCGAAGAGGCCAAGGCCAAACTCCTGGCTGAGCAGCGAAACAAGAAGAAGGACAATGGCACCTCCTTCGTCCCCACGAACATCGCTAGGCACAGAGAGGAGCCCAAAGCCCGGCCACTCCGAGTGGGGGACACCGAGAAACCAGGACCCGAACAAACTCCTCCGAACCGCAAGAGGCCGGCCAACGAGAAAGCCACAGACGACTACCACTACGAAAAGTTTAAGAAGATGAATAGGAGATACTGA

Function

NR:

description
PREDICTED: uncharacterized protein C9orf78 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019941 True 786 mRNA 0.51 9 3207887 3211163

Neighbor

gene id symbol gene type direction distance location
AMCG00019943 NA coding downstream 6678 3194777 ~ 3201209 (-)
AMCG00019940 NA coding downstream 16892 3188657 ~ 3190995 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding downstream 42125 3158284 ~ 3165762 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding downstream 78457 3112095 ~ 3129430 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding downstream 153380 3034391 ~ 3054507 (-)
AMCG00019938 prrx1 coding upstream 44049 3255212 ~ 3257837 (-)
AMCG00019945 garnl3,LOC102797662 coding upstream 112616 3323779 ~ 3327751 (-)
AMCG00019944 NA coding upstream 129639 3340802 ~ 3379597 (-)
AMCG00019947 NA coding upstream 285113 3496276 ~ 3497746 (-)
AMCG00019946 NA coding upstream 312125 3523288 ~ 3529636 (-)
G59556 NA non-coding downstream 632217 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 986693 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1015340 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1545708 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1713914 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 279555 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 386042 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 428875 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 434876 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 459860 3671023 ~ 3675014 (-)
AMCG00019942 NA other downstream 21922 3166237 ~ 3185965 (-)
G59720 NA other downstream 96540 3107801 ~ 3111347 (-)
G59712 NA other downstream 173552 3031856 ~ 3034335 (-)
G59545 NA other downstream 700867 2494899 ~ 2507020 (-)
G59530 NA other downstream 727088 2454911 ~ 2480799 (-)
G59806 NA other upstream 268619 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1801281 5012444 ~ 5061512 (-)
G60118 NA other upstream 2052751 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2065499 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 2080427 5291590 ~ 5292673 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031211 C5H9orf78 coding NC_007116.7 CM002889.2 33295678 ~ 33298352 (-)