AMCG00019942


Basic Information

Item Value
gene id AMCG00019942
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3166237 ~ 3185965 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019942
AATGTCACGCCAACTCCATGCACGCCGGATTGAGGGAGTGGACAAAAATATttgGTTTGATCATTTACCCATTGAAATCTACTCTGTTAAACAGTGAACTGATCCAGTGTCTttatgctttgtgtgtgtgtgtcctggaCAGGGTGGAGTTTACTAAACTGGCAGCAGACTACAAGGCTGTGAACCTGGGTCAGGGTTTCCCAGATTTCTCCCCCCCCGACTTTGTGAAGGAAGCGTTTGGTCGAGCTGTCAGTGGGGATTTCTCCCATCACCAGTACACCCATGCTTTTGGCCACCCAGCGCTGGTGAAAATCCTCGCCCAGTTTTTTCAGGGGAGTTTGGGCCAGGAGATTGACCCCAAGGACAACATCCTGGTCACTGTGGGGGCCTACCAGGCTCTCCACTGCACCTTTCAGGCCCTGGTGGACGAAGGAGATGAGGTGATCATTATTGAGCCCTTTTTTGACTGCTATCACCCAATGGTGAAGATGGCCGGCGGACGTGCAGTCTTTGTGCCTTTGAGACCGGGTTTGGCCACAATTCCCGTGTCTGCCTTTTACAGCCCTGAGAACCAGAAGGACTTTGAAAACTACATCAGGTTCTGCTTTGTGAAGGAGGACTCCACACTGAGGGCTGCCGAGAAGATCCTGAGGGAATGGAGTGTGAAGAACAGGGCCGTGGCCAGTCTTGAAATGGTGGAAttgaGAATGTCACGCAAACTCCACGCACGCCGGGTCGAGGGAATTACCACAGCTCTTTGGGTCAAGATTTTTAAACTGGCCGCAGACTACAAGGCTGTGGACCTGAGTTTGGGCTACCCAGATTACTGCCCCCCGGACTTTGTGAGGGAAGCTCTTGGTCAAGCTGTCAGTGGGGATTGGTCCCAGCATCAGTACACCCACGCTTTTGGCCACCCAGCGCTGGTGAAAGTCCTCGCCCAGTTCTTTCAGGGGAGTTTGGGCCAGGAGATTGACCCCCAGGACAACATCCTGGTCACTGTGGGGGCCTACCAGGCTCTCCACTACACCTTTCAGGCCCTGGTGGACGAAGGAGATGAGGTGATCATTATTGACCCCTCCTGTGGCTGGTATGAGTCAATGGTGAAGATGGCCGGTGGACGTGCAGTCTTTGTGCCTTTGAGACCGAAAGCAGGTCCGGAGGGGCTCCAGTCTAGCAGTCACTGGGCTTTGGATCCAGAGGAGCTGGCCGGTAAATTCACCCAGCGCACTAAAGCCATTGTGCTGAACACGCCCAACAACCCTCTGGGGAAGGTGTTCAAGCGGGAGGAGCTGCAGGTGATAGCGGACCTGTGTGTTAAACATGGAGTGGTCTGCGTAAGCGACGAGGTCTGTGAGGGGCTGATGTACGACAGAGCGCAGCACGTCAAAATAGcCAGCCTGCCGGGAATGTGGGAGAGGACTATCACGATCGGGAGTGCAGGGAAAACATTCAGCGCCACCGGACTGAAGGTGGGCTGGGCAATCGGTCCCGAGTCCATTCTGAAACACGTAAAATCTGTCCATGTGGTTTCTGTGTATAATTGTCCGACTACACCTCAGGAGGCTGTGGCCCGCTTGTTTCAGAGAGAACTGGAGAATTATGGGAAACCAGAAAGCTATATCCTCCAGCTGCCTCAGACACTCAATGGGAAACGGAAGAAGCTGGCTGATTCTCTAGTT
>TU74744
AGCGTGGGAATGCAGCCCATCATGCCTGAGGGGGGCTACTTCATGATCGCAGACATTTCCACAATCAGGGTAGATCTGCAGGATCCGCACAATGCAGATGAGCCGTACGATTATCGATTTGTGAAATGGATGATTAAGAACAAGGGTTTGGCCACAATTCCCGTGTCTGCCTTTTACAGCCCTGAGAACCAGAAGGACTTTGAAAACTACATCAGGTTCTGCTTTGTGAAGGAGGACTCCACACTGAGGGCTGCCGAGAAGATCCTGAGGGAATGGAGTGTGAAGAAGTGAACGAGGTGCTGAAAACCTTCCCATGCTCCTGTTAGCAGCAGGGCCGTGGCCAGTCTTGAAATGGTGGAAGTAAGAGCCAATGGACAATAGTAACAACCCATTAATGTGCATCAGTGGGTTGATTCAGAATAGTTTAGAATGAACATCACTCTCACTACTGTAGCAGAGCTTGGTTTGTACTCCGAAATATACTGGATACACCTGCttttaaaagtgattttatttttgttgaagaCGACTCTGGCCTCTGTTTACAGTGTCGTCAGTCTGGCTCAGGCATGGGGATTATGTCTGTTCAGTATGATAATTTTGACATTGAAATCTACCTCTGTTTGATTGGACTGCTGTCAATCCTAAAGCAATCATGCACTCACTGCGATGATTTTTCTAAATGGAATTCAGATGGACAGTTCTTTgacaatggatttaaaacaagGTTGAAAACCATTTAACCTTCCCCATACATCCTATGCTACAACAGTGaaatattgttctgtttttgagCTGTTTATGTGTGTTGGAATCTCATCTAGAAAAAATTGAGTTTAATTAAACCATGGCTTCTAGTCTGCTAGATTGTTTCATACCCACCAATAATTTCAGATCTCACTGCGTTGCATGTAGGGATTTTGGCGTGTGCGTAAGGAAGAATATGGATTCACATGTGGTGCTTTTAGTACATAAAAACATAGGAAattgtccaatcgagaggaggccattcgccccatcgtgctcgtttggtgtccattaataaccgagtgatccaaggatcctatccagtctgtttctgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtattgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgatttcgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctcagtctctaaaaagtgaaaaacctttatctaaattaaatctaaaaagaAATCTAAATCTCCGTGACATTATCCTAAGGTTGTGACATTTGAAATCACACCATACCTttagcacacagacacacacacacactcactcaccacccccctccccccatgcCGTTGGCACTAGGGTGACCGTACGTAGTCCCGGATTTTAAACGTCCCGCTGTACCGACAAATGACAGGCAGATGCTCAAGTATTGTTGAAAAATTCGCAATGAATACAATCACTAGCTGATCCATTGACAGAGGTGTCAGGGCATGttgttttaaaggaatcccatacaGAATAAAAGTTGATGTTATAGACGTGTGATTCatttaacactgaatttgtTAAAAATGGTTTGAGTAAGTTATGTGTTGCTGGTGTATTCATAAAACGATATGAATGTAATAGTTGTTCTTAAGGATATATgttgaaattaacttttttttttcaattttatttgtacCAATTccatatttttaagtgatgtgatttgttttattattattttttccaaaatgtcccggtttctacttttgaaaatgtggtCATTATCtggcacccccccccccccccccgccaaccCTACCCACCCGCTCTCAGTGGAGACCCCCCACACAAAAATCTAAtattaacaaatgaaaaaaatactataattcAAATATTGCAAACCTTTCAAATGCCTATCCCCGCACACAACCAATTATTCCATTGCCTC
>TU74745
AGCGTGGGAATGCAGCCCATCATGCCTGAGGGGGGCTACTTCATGATCGCAGACATTTCCACAATCAGGGTAGATCTGCAGGATCCGCACAATGCAGATGAGCCGTACGATTATCGATTTGTGAAATGGATGATTAAGAACAAGGGTTTGGCCACAATTCCCGTGTCTGCCTTTTACAGCCCTGAGAACCAGAAGGACTTTGAAAACTACATCAGGTTCTGCTTTGTGAAGGAGGACTCCACACTGAGGGCTGCCGAGAAGATCCTGAGGGAATGGAGTGTGAAGAAGTGAACGACAAACCAGGAGCTGAAAACCTTCCCACACTCTGTTTACagtcttgtctgtctgtctcagggATGTGGATTTTGTCTATCCAATATGATAACTTTGACATTGAAATCgacttctgttttcttttgagtGGACTGCTGTCAATCCTAAAACATTCATGCTCTCACTGCAATGATATTTCGAAGTGGAATTCAGACGGACAATTCTTTTGAATCTTTCTATTGCACACTGTGTTACATTGGTACAAAGGGAAAACAGTGACTTAATCTGAAGTCATGTCTTTTAAAGAAGTGTCTGTAATTTGCAGATGCCAAACAAATTGTCAATTTTTAAAGACCCAGTGTTTTATTACTATGGAGTCCGGAAGGTAAAAGCTAACATTTATATTCTACTCCTGGTAAAGGAAAAGTGTATTAAGTTCCTTCTCAGTTTTGTCAGTAAGTAGGCAAATTTATACACCAAATAGATTGCAGGACACGCTCATATGCGTGTATCTAAGTGGATGAAGTGATAATTACTAGTGCACAGCATGTTCAAAGTGATTGAACTGTTTCAactaataaatattatataccCAAATGTATCGTACCCAAAATCAGTGCACATATGTTCATGTTGTGGTACAGTGGATTTAAAACAAGGCGATAACAATGAAACCTTCCTCATACATCCTATGCCACAACagtgaaatattgttttgttttctgtttttgatctctttgtgtgtgttgggatcTCATGCAtctcaaaaaatgtaaaaaagttaacagagtttaattaaaccattgcTTAGTTCTAGACTGCTAGATTGTTTAATTCCCATCATGACTGATTATTACTAAATCTCAGTGCGTTGCATGTAGTGATTTTGAAATTGCTCAGGAATGCCGATGTTAAGGAGGAATACAGATTATGGATTTTGATGagcattttgttatttagaGCACTGAATCATTTGATTG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019942 False 1679 mRNA 0.54 16 3170870 3185965
TU74744 True 2098 TUCP 0.42 4 3178041 3183066
TU74745 False 1253 TUCP 0.39 5 3166237 3183066

Neighbor

gene id symbol gene type direction distance location
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding downstream 475 3158284 ~ 3165762 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding downstream 36807 3112095 ~ 3129430 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding downstream 111730 3034391 ~ 3054507 (-)
AMCG00019927 NA coding downstream 176367 2970844 ~ 2989870 (-)
AMCG00019922 NA coding downstream 223602 2921041 ~ 2942635 (-)
AMCG00019940 NA coding upstream 2692 3188657 ~ 3190995 (-)
AMCG00019943 NA coding upstream 8812 3194777 ~ 3201209 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding upstream 21922 3207887 ~ 3211163 (-)
AMCG00019938 prrx1 coding upstream 69247 3255212 ~ 3257837 (-)
AMCG00019945 garnl3,LOC102797662 coding upstream 137814 3323779 ~ 3327751 (-)
G59556 NA non-coding downstream 590567 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 945043 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 973690 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1504058 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1672264 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 304753 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 411240 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 454073 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 460074 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 485058 3671023 ~ 3675014 (-)
G59720 NA other downstream 54890 3107801 ~ 3111347 (-)
G59712 NA other downstream 131902 3031856 ~ 3034335 (-)
G59545 NA other downstream 659217 2494899 ~ 2507020 (-)
G59530 NA other downstream 685438 2454911 ~ 2480799 (-)
G59505 NA other downstream 838822 2324288 ~ 2327415 (-)
G59806 NA other upstream 293817 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1826479 5012444 ~ 5061512 (-)
G60118 NA other upstream 2077949 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 2090697 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 2105625 5291590 ~ 5292673 (-)

Expression


Co-expression Network