AMCG00019945 (garnl3,LOC102797662)


Basic Information

Item Value
gene id AMCG00019945
gene name garnl3,LOC102797662
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3323779 ~ 3327751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019945
ATGGACAATTTAAGGCGAGCCGTTACGGCCCGTGTGCGTTACTATAATAGCAACACGCTGCGGGCCAAGCAGTGCCTTTACATGCCAAAGATGCACGACACTTTACTGCACACCCCTGTCAAAAAGAAGTCCTGCTTCACAAAGAAACTGTTGTGCTTCcgtacatacaaaaataatgccACCACCCTGCTGACCGCATTGTTCCTGCAGGAGATCTGTCTGTGCGACTCGCCCATGGTGATGGCTCTAGTGGACGGTCCCACCGGGGAAAATGACAACATGATCTGCGTGGCCTACAAGCACCAGTTTGACCTGATCAACGAGAGCACAGGCGAGGCCTACCGGCTGCATCACGTCGAAGCCAACAGGGTCAATTTCGTGGCAGCCATAGACGTGTATGAAGACGGGGAAGCCGGGCTCTTGCTGTGTTATAACTATATATGTTATTACAAGAAGGTGTGTCCGTTCAACGGCGCCACTCCGATGATCCAGTCCACAGCCTCGGACTTTCACTTCAGCTGGAATCAGGTTCCCAATGCCATCGTCTGTGCGTTCCCGTATATCCTGGCATTTACGACCGACTCCATCGAGATTCGGCTCGTGGTGAACGGGAATCTCGTCCACACCGCGGTGGTGCCTGAGCTCCAGCTGGCCGCCTCTAGGTCGGATATTTATTTTGCCTCCTCTGCTGCGGTAAACGCTGCCTCCAATAGCAGCTCAAAGGAGACCAGTTCACAGAGCTCCCCGCAGACGCCCACCGCCTACGAGATGCCCATGTTCCCATCGCCCTTAGGAGATGGTAAGTTTGCCGCCAGTCACTCGTGCGTCGCAGGGATCTCGGTGACTGAACAGGCGGTTCACATAGCTTCGGGCTCTGCTGCAGAATCCAGCCACGCTGCTAAAACATCAGCATCTGCACTAATTCTCTCAGGGTCTGGCACCTTGAACTCTAACCCTTAG

Function

symbol description
garnl3 Predicted to enable GTPase activator activity. Predicted to act upstream of or within regulation of small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GARNL3 (GTPase activating Rap/RanGAP domain like 3).

NR:

description
PREDICTED: GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X5

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019945 True 960 mRNA 0.54 5 3323779 3327751

Neighbor

gene id symbol gene type direction distance location
AMCG00019938 prrx1 coding downstream 65942 3255212 ~ 3257837 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding downstream 112616 3207887 ~ 3211163 (-)
AMCG00019943 NA coding downstream 122570 3194777 ~ 3201209 (-)
AMCG00019940 NA coding downstream 132784 3188657 ~ 3190995 (-)
AMCG00019939 zgc:101748,LOC107705992,LOC107661555,LOC107675763,LOC107737178,LOC107599407 coding downstream 158017 3158284 ~ 3165762 (-)
AMCG00019944 NA coding upstream 13051 3340802 ~ 3379597 (-)
AMCG00019947 NA coding upstream 168525 3496276 ~ 3497746 (-)
AMCG00019946 NA coding upstream 195537 3523288 ~ 3529636 (-)
AMCG00019950 NA coding upstream 347356 3675107 ~ 3706097 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 395144 3722895 ~ 3728526 (-)
G59556 NA non-coding downstream 748109 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 1102585 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1131232 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1661600 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1829806 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 162967 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 269454 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 312287 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 318288 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 343272 3671023 ~ 3675014 (-)
AMCG00019942 NA other downstream 137814 3166237 ~ 3185965 (-)
G59720 NA other downstream 212432 3107801 ~ 3111347 (-)
G59712 NA other downstream 289444 3031856 ~ 3034335 (-)
G59545 NA other downstream 816759 2494899 ~ 2507020 (-)
G59530 NA other downstream 842980 2454911 ~ 2480799 (-)
G59806 NA other upstream 152031 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1684693 5012444 ~ 5061512 (-)
G60118 NA other upstream 1936163 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1948911 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1963839 5291590 ~ 5292673 (-)

Expression


Co-expression Network