AMCG00019947


Basic Information

Item Value
gene id AMCG00019947
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3496276 ~ 3497746 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019947
ATGGGTGGAGGAAGGATAAGGATCTCCAAAAGAGTGCACATGTTTCACCAGACCATCCCCAAGCTCGATCCCCCACCCCCTTGCGTCACCAGGAAGCGCCCGGGCCGTACCCTCTCCCCGGGACAGGAGGCGGACCCCAAGCCAACGCCCACCCCTGCTGATCCCGGTGGCTGGTCTTCAGCCCAACATGACGGCACGGCCCTCACCGACGTCACGCCCTGCTCCTTCAGCTCCGGCGATTTCGAGTCCCTCGGCGGCGAGAGCAAGTCACGCTCAGCCAGCGAGGACTCGGGGGTGCGCTCCGAGGAGAAGTCCCTCCTGTCGCCCCTGCAGGAGGACCTGTTCGAGGACAACGGTGCCTTCTTTTCCAcctccagcagctgcagcagcaacCCGGAGGACAAAGTCTCGCCCTTCCTCACCAGCACGGGCAAAGCCAACCCACTGAGGAACTCCAGTAGCTTTGAGACCAGCTACAGCAACACTCTTCCATTTTCTTCCCCCTCCAACGAAACCTGTCTCCACATCAGCTTCTCTGAGGACGAGCTGCCGGACAACGACACGGACGACTCGGGGGTCCCTCTACGCAGCTAA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019947 True 594 mRNA 0.62 2 3496276 3497746

Neighbor

gene id symbol gene type direction distance location
AMCG00019944 NA coding downstream 116679 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 168525 3323779 ~ 3327751 (-)
AMCG00019938 prrx1 coding downstream 238439 3255212 ~ 3257837 (-)
AMCG00019941 cunh9orf78,LOC107093874 coding downstream 285113 3207887 ~ 3211163 (-)
AMCG00019943 NA coding downstream 295067 3194777 ~ 3201209 (-)
AMCG00019946 NA coding upstream 25542 3523288 ~ 3529636 (-)
AMCG00019950 NA coding upstream 177361 3675107 ~ 3706097 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 225149 3722895 ~ 3728526 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 609251 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 645244 4142990 ~ 4164282 (-)
G59810 NA non-coding downstream 5227 3490718 ~ 3491049 (-)
G59556 NA non-coding downstream 920606 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 1275082 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1303729 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1834097 1605102 ~ 1662179 (-)
G59825 ttll11,LOC107579646 non-coding upstream 99459 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 142292 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 148293 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 173277 3671023 ~ 3675014 (-)
G59853 NA non-coding upstream 283152 3780898 ~ 3796706 (-)
G59806 NA other downstream 16167 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 310311 3166237 ~ 3185965 (-)
G59720 NA other downstream 384929 3107801 ~ 3111347 (-)
G59712 NA other downstream 461941 3031856 ~ 3034335 (-)
G59545 NA other downstream 989256 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1514698 5012444 ~ 5061512 (-)
G60118 NA other upstream 1766168 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1778916 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1793844 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2661831 6159577 ~ 6172474 (-)

Expression


Co-expression Network