AMCG00019950


Basic Information

Item Value
gene id AMCG00019950
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3675107 ~ 3706097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019950
ATGGCGTCTGCTCCTCAGGACGCTGGCGTCAAAACGCTGTTTGCTGATTTCCATGATGGCACCATCAGCGtgctCTGGTCCACTTTCATCGCATTGTCGAGCCTGGGCTATCGTGGCCCTTCTCCCCCGGCCGTGCTTTGGTTCTCAGCACACGTTCGCCCTCCTGTAACTCTGACAGCACCGCTCAGCGTCAAAATCACTTATTGTGATGAATTCCAGGGCCTTTGCACATCAACTCCGGTTACCCGTTCTGAGAGCCAGAGACTCTACCCCTGTGAATCCCCCTGGAAATCAAAATGCATAGCTGAACGGCCCAGTGTGTCTGTGGTCCCAACACCATCATGGCCGGAGCTTCCTGTATGTCTGGTTCCCCTAATATCTTCCTCTGCTTCTCCCATCCAGGACTTCCTCACGGACCTCATGATGTCGGAGGTGGACCGCTGCGGCGAGAACGAGCACCTCATATTCCGAGAGAACACCCTGGCTACCAAAGCAATTGAGGAGTATCTCAAACTGGTTGGACAGAAGTACCTACAAGATGCACTTGGCGAGTTCATTAAGGCGCTGTACGAGTCGGATGAAAACTGTGAGGTGGACCCCGGCAAGTGTTCAGCCGGAGATCTCCCGGAGCACCAGAGTAACCTGAAGATGTGCTGCGAACTGGCCTTCTGCAAGATCATCAACTCCTACTGCGTGTTTCCCCGGGAGCTGAAGGAGGTCTTCGCCTCATGGCGGCAGGAGTGCAGTAACCGGGGTCGGCCAGACATCAGCGAGAGGCTGATCAGCGCCTCCCTGTTCCTGCGCTTCCTGTGCCCGGCCATCATGTCGCCCTCGCTGTTCAGCCTGCTGCAGGAGTACCCCGACGACCGCACGGCCCGCACGCTCACCCTCATCGCCAAGGTCACACAGAACCTGGCCAACTTTGCCAAATTTGGCAGCAAGGAGGAGTACATGTCCTTCATGAACCAGTTCCTGGAGCACGAGTGGACCAACATGCAGAGGTTCCTGCTGGAGATCTCCAACCCCGAAACCATCTCCAACACGGCCGGCTTTGAGGGCTACATCGATCTGGGCCGAGAGCTGTCCACGCTGCATTCACTCCTGTCTGAGGGCACTGCTTCCAAGCTGGGTCCTCTTCCACGCATCCTGAGGGACGTCAACACGGCCCTCACCAACCCCTCCAGTGTGCAGGTGTCCGTCACCTCGGAGCGCCTGGCCTCCCCACCCAGCGCCGGTTGCAGCATCTCTACCGGCCTGCAGAAGATGGTCATCGAGAACGATCTGTCGGGCCTGGTGGACTTCACACGGCTGCCGTCCCCCACCCCCGAGAACAAGGACCTGTTCTTCGTGACGAGGAACTCGGGAGCCCAGCCCTCGCCGGCCCGCAGCTCCAGCTACTCAGAGGCCAACGAGCCCGACCTGCAGATGCCCAACGGCAGCAAGAGCCTGTCCATGGTGGACCTGCAGGACAACCGCAGCCTGGAGAGCGGGCCCAACGCCTCGGCTGTGCCAGACTCCCTCAACGACAGCCAGTCGTCCATCGGGCAGTTGGCGGGCGGGGTGTGGTCGGCGCGGACACCCCAGGGCAATGCCAACATCGGGCCCACGATGAGGAGGCAGGGCCAGACCCCCACCACGCCCAACTCGGAGAACGTCCCGGGCAGGCCTCAGCTGCTGGCGCCACTCTCCTTCCAGAACCCAGTCTACCAGATGGCAGCAGGGCTGCCAGTGTCCCCCCGCGGCGTGGCCGACTCCAGCTCCGAGTGCCACAGCTCCATCAGCTCCCAGAGCAACAACGAGGACGGCAAGCACGGCTTCATCAACCACGGCACCAGCGAGGACTTCGCCCGGCGTTCGGGGGAGTTCACGCGCCGCCAGCTGTCCCTGACTGAGAGCCAGCATCAGCCCACTGTCCCACGGCAGAACAGCGCCGGCCCCCAGCGCCGGATAGACCAGCCGCCCCCTCCAGTCACCAGGGGACGCACCCCTCCCAACCTCTTAAACACCACCCCGTACCCCCGGCCGTCCAGTGGGAGCATGATGTCCTCGTCCCCGGACTGGCCGGGCAGCGGAGCCCGGTTACGGCAGCAGTCGTCCTCCTCCAAGGGGGATAGTCCTGAGACCAAGCAGCGGACGATGCACAAGCAGGCCCCCTCCCCCGTGAATCCCAATGCACTGGACCGCACCGCCGCCTGGCTTTTGAATATGAATGTGCAGTATATAGAACACGAAGGCATTGACCCAGATCCCAAACACAGGGAGGAGCTCAGAAACAAAGAGGAACTCACTCAGACTGAAAAGTACCAGCAGGAGATCGCCATCCTGCAGGACAAGCTGCGGCTCTCGGCCAAGAAGTTGGAGGACTACGAGTGCCGGCTGAAGGGGCAGGACGACCAGGCACAGAAGATGCTGCTGGAGTACCAGGCCCGGCTGGAGGAGAGCGAGGAGCGCCTGAGGAGGCAGCAGGAGGACAAGGAGCTGCAGATGAAGGGCATCATCAGCAGCGCCCTGACGCAGCTGAAGGAGCGCTACAGCATGCAGACGCGCAACGGCATCTCCCCCACCAACCCGACCAAACTGCAGATCACGGAGAACGGGGAGTTCAGAAACAGCAGCAACTGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019950 True 2625 mRNA 0.61 11 3675107 3706097

Neighbor

gene id symbol gene type direction distance location
AMCG00019946 NA coding downstream 145471 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 177361 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 295510 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 347356 3323779 ~ 3327751 (-)
AMCG00019938 prrx1 coding downstream 417270 3255212 ~ 3257837 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 16798 3722895 ~ 3728526 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 400900 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 436893 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 458702 4164799 ~ 4172609 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 479208 4185305 ~ 4195180 (-)
G59852 NA non-coding downstream 93 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 27773 3646039 ~ 3647334 (-)
G59827 NA non-coding downstream 32993 3640038 ~ 3642114 (-)
G59825 ttll11,LOC107579646 non-coding downstream 77347 3597205 ~ 3597760 (-)
G59810 NA non-coding downstream 184058 3490718 ~ 3491049 (-)
G59853 NA non-coding upstream 74801 3780898 ~ 3796706 (-)
G59862 NA non-coding upstream 333418 4039515 ~ 4039918 (-)
G59880 NA non-coding upstream 389253 4095350 ~ 4095984 (-)
G59907 NA non-coding upstream 602579 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 915880 4621977 ~ 4622357 (-)
G59806 NA other downstream 194998 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 489142 3166237 ~ 3185965 (-)
G59720 NA other downstream 563760 3107801 ~ 3111347 (-)
G59712 NA other downstream 640772 3031856 ~ 3034335 (-)
G59545 NA other downstream 1168087 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1306347 5012444 ~ 5061512 (-)
G60118 NA other upstream 1557817 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1570565 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1585493 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2453480 6159577 ~ 6172474 (-)

Expression


Co-expression Network