AMCG00019952 (phf19,LOC106580128,LOC106585785,LOC107557185)


Basic Information

Item Value
gene id AMCG00019952
gene name phf19,LOC106580128,LOC106585785,LOC107557185
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4106997 ~ 4133823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019952
TTCAGTCTCAGACTTTGTTCATATGAAGCTATAATCCCACCCCCTAAACTCCAGAGACACAATCAAACGAAGAAGCCATAAGGACGGCCATATGCTTTTATGACTCATGTGACATTGTATCAGAGGCTGATGGAGGGTGGCGTGCTCGAGCCCTACAGGGATATCTACAGCACCAACAGCCATGAGCAGCTGGAGCCCAAAAGATCCCCTCTGCACGGAGGAAAAGGCTGTGCCGAGCTGGAGACCAGTCTGAGCGAGGGGCAGTACGTGTTGTGTCGCTGGTCAGACGGGCTGTATTACCTGGGGAAGATCCAGCGACTGAGCACCTCAAAGCAAAGCTGCTTCGTAACCTTTGAGGACAATTCCAAATTCTGGGTTCTGTTTAAAGATGTGCAGCACGCTGGAGTTCCCGGGGAAGAACCCAAATGTGCCGTTTGTTCCGGAATGGCTTTGGTGTCGGACAATGAAATTCTTATATGTGGCAAATGTGGAATAGGTTATCACCAGCAATGCCATCTTCCTCAGGTAGAGAGCAATTTGGAGACTTCGCCGTGGTTTTGCAGGAGATGCATTTTTGCATTGGCAGTGAGGAAAGGTGGGGCGCTGAAGAAAGGGCCCATCGCTAAAGCGCTGCAGGCGATGAAGCAGGTGCTGACCTACAACCCCGAGGAGCTGGAGTGGGACTCTCTGCACAGAACCAACCACCAGCAGTGTTACTGCTACTGCGGCGGGCCCGGGGAATGGTACCTCAAGATGCTGCAGTGCTTTAGGTGTCAGCAGTGGTTTCACGAAGCCTGTGTTCAGTGTCTACACGAGTCCATGATGTTTGGAGACAGattttatttgtttatctgtgcGGTGTGCAATAAAGGAGTGGAATACATCAAACGCTTAGCCCTGAGATGGGTTGATGTGGTCCACCTTGCTCTTTACAATCTGGGGGTGCAGAGTAAAAAGAAATACTTTGAACTGGAGGAGATCCTCAACTTTGTTAGTAACAACTGGGACCATTTCCAACTTGGAAAGCTAGCCAACACCCCACTGACAGAACGAAGCCAGTACGTTTTAGACGCTCTCAATAACTATAAAAGCAAGTTTCTTTgtggaaaggaaataaaaaagaggAAATGCATCTTCCGGCTGAGAACACGAGTCCCTCCCAACCCCCCGTCCAAACTGTTCCCGGAGAGAGCGCCAAACCCCGAGGGGCGGGAGGGGCGGAAGAGGGGGCGAGGCAGGAACAGCTCGTTGCCTCCAGAGTTTCAGCCCCAGAAGAGGGCGAAGAAGAAGAGGTCAAAGTGGCTGTTGGAGGACGCTATCCCAAATAATGACCTGACCTCCTCCTGGAGCACAAATCACCACATGGCCAGTATATTTGACTTCACTTTGGACGAACTGCAGAGTTTGAAAAGCACCAGTTCAGGACGCACCTTCAGTCTGGACCTCGACTCTACAGATGCTGCAAGCACTTCTGGATCGGCTACTACCAGCATATCGTACGAGTACCGGAAGAACGTGGGCAGTCGGAAGAGGAAGCTGCGCACCTCCAGCTACACGTTGCTGGCAGCCAAGAGGGCGGCGGCGGAGAGCTACAGCGGCCAGAGTGCCTTCGATGCAGCCGAGTCCCCCGAGCCCCTGGACAACGGCATCGACAGCCACACCTTCGAGAGCATCAGCGAGGACGACTCGTCGCTCTCCCACCTCAAGTCCTCCATCACCAGCTACTTTGGGGCAGCGGGCCGGCTGACCTGCGGAGAGAAGTACCAGGTGTTGGCTCGCCGGGTCACCCCTGAGGGCAAGGTCCAGTATTTGGTGGAGTGGGAGGGCACCACACCTTACTGACGGGGCGGGTGGAGGTAGGGGAGAGGGTCCACTTGATTGTCT

Function

symbol description
phf19 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19).

NR:

description
PREDICTED: PHD finger protein 19-like

GO: NA

KEGG:

id description
K11486 PHF19, PCL3; PHD finger protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019952 True 1884 mRNA 0.53 15 4106997 4133823

Neighbor

gene id symbol gene type direction distance location
AMCG00019949 LOC107599025,LOC107725315 coding downstream 378471 3722895 ~ 3728526 (-)
AMCG00019950 NA coding downstream 400900 3675107 ~ 3706097 (-)
AMCG00019946 NA coding downstream 577361 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 609251 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 727400 3340802 ~ 3379597 (-)
AMCG00019953 NA coding upstream 9167 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 30976 4164799 ~ 4172609 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 51482 4185305 ~ 4195180 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 121449 4255272 ~ 4263577 (-)
AMCG00019960 NA coding upstream 488594 4622417 ~ 4627869 (-)
G59880 NA non-coding downstream 11013 4095350 ~ 4095984 (-)
G59862 NA non-coding downstream 67079 4039515 ~ 4039918 (-)
G59853 NA non-coding downstream 310291 3780898 ~ 3796706 (-)
G59852 NA non-coding downstream 431983 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 459663 3646039 ~ 3647334 (-)
G59907 NA non-coding upstream 174853 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 488154 4621977 ~ 4622357 (-)
G59932 NA non-coding upstream 514199 4648022 ~ 4651002 (-)
G59938 NA non-coding upstream 534527 4668350 ~ 4668869 (-)
G59939 NA non-coding upstream 535135 4668958 ~ 4669158 (-)
G59806 NA other downstream 626888 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 921032 3166237 ~ 3185965 (-)
G59720 NA other downstream 995650 3107801 ~ 3111347 (-)
G59712 NA other downstream 1072662 3031856 ~ 3034335 (-)
G59545 NA other downstream 1599977 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 878621 5012444 ~ 5061512 (-)
G60118 NA other upstream 1130091 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1142839 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1157767 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2025754 6159577 ~ 6172474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_06978661_07003520 PHF19 coding CI01000010 null 6977599 ~ 7003929 (+)