AMCG00019953


Basic Information

Item Value
gene id AMCG00019953
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4142990 ~ 4164282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019953
ACCACGGTGCTTTCTATGGGGGTTATAGTGTCATATTCTAAAAAGCTGTTATTACCTCATATCCCTGGGTGCTGACACAGACATGTCAACAACTTCCTGCTACAAAGTTGCCTGTTCGTGGCGGCGCTGTCTAAGAACTACagaaagcatgtgtgtgtgattgacactttgttttactgtgttGCACAACGTCTTAAACAGGTATTATTTGTCCACTTGTACCGATGGTTGTTTTCAACTTgttcaaggaaggaaaaacaaccAAGACAAGCCAGGGTTTGCAaaagcagtgatttcattgtaTTCACAACACGCGTGCATTGCTAAACCACATCTTGCCAACTTTGGCACATGACAAAGCACCGGTGGTGTAGAAATACCCCGCAGCGCACGATCCAGCTGACCTGGCTTCACCCTCCCCAAGCCGGACTGACATCTCAATGGCTCGCAAATCGGCCGGGGACTTGTACAACGGGCTCTCGTCGGCGCCCGGGGAAAACGAGTATCCCTCTGGGTTTCCACAAAACATCTGCGACGATGTGCCCCAGGACAAGTACCTGTGCAGCAACTGCAACAACCTGCTGAAGAAAGCCCAGCAGACCCTGTGCGGCCACCGCTACTGCATCGCCTGCGTCCACTGGCTGATGAGGAACAATGAAAATCTAGTGTGTAAGAAGTGCAAAGAAGAGGACCCCAGTGTCGACTGTGAGAACAGTATTTTGATGCCAGAACATttcttCAGCGACACTGCTATTAACAAAGAGATTCTGGAACTGAAGGTCCACTGTGCCAACCAGGGCTGCGCCTGGAAGAGCACACTCAAACACTATGAGGATCACCAGAGTCAGTGTGAATATGCCCTGATCCCCTGTAATATTGGCTGCGGACACATGGTGATTAGAAAGAAGCTCGCCAGCCACTTAGAAAAGGGGTGTGCAAACAACATGATCACCTGTCACTTGTGTTCCCGTAAAATGAGACAAGCGGATTTCCAGGGGAATAAAGAGAAAGTAAAAGAACATGAAAACTCAAGTCTAGTGGGGCACCTACAGCTCTTGCTCCAGGTGATCAGCAGCATTAAAACTTCCTTGCCCACCGATCTTGGCCCCGGGGATGAGAGCAGGGATCAGGTCTTGGGTGCAGAGCTGAAAGTGATGGAGCTCAGGGACCACATGGCATCGCTGCAGCTGCAGGGAGCTGTGGAGGTCAACGGGGACATGGTGGTGGCTGACGGTGCCTGCCCAGAGCCTTCCATTTCCAGCCTGGTGCACGATGACCGGCTGGAGGACATCAGGGAGAGGCTTGCCAAGCTGCAGCAGAGGATCAGCGTCTACGAGAACATCGTCACCGTCCTCAACAGGGAGGTGGAGAAATCCCAGGGGGCCGTGATCGCGCTGGAGCACCAGAACAAAGTCAACCAGGAGACCATTAAAAACCTGGAGCTGCAGgtggtggagcagcaGGGGAAGCTCGCTATGAAAGACCTGTTCATCAACAACCTCCACCTGGCCATCTGCTCCCTTGAGGACGCCTCCTATGATGGGACCTTCATCTGGAAGATCTCCGACCTGGCCAAAAAAATGCAGGATGCCGCCGCCGGCCGAGGAAATAACCTGTATTCATCAGCTTTCTACACCGGGAAGTATGGCTACAAGGTGTGCATGAGGCTGTATTTGAATGGAGACGGTGCGGGGAAGGGATCCCACATCTCCCTGTTCTTCGTGGTGATGAAGGGGGAGTACGATGCCCTGCTTTCTTGGCCCTTTAAGCACAAGgttaCCTTTTTCCTGCTGGATCAGAACCAGAGAGAGCACGTGATCGATGCATTCCGCCCGGACCTGTCCTCATCTTCCTTCCAGAGGCCGACCAAAGAAATGAACGTGGCCAGTGGCTGCCCCCTGTTCTTTCCTCTCAACAAGCTCAAGTCCCCTAAACATGCGTACAGCAAGGACGACACCCTGTTCATTAAGTGCGTTGTGGACACAGCTTCATAAGCATCCCAAAGATTTGTAGCATTTAGCTTTGGGATTCCAGATTGAGCCAAGTGCTCCACAGTCAAGTAATGTACAGAAGCTGCAGTCACTATTaccacagtgtttgttttgttgagtcagcaatttaaacaaaaagtcctaatatttttatgtgttctgtattgagtttttattttctccaccaTTTATCTTCGTCCAGTGTTTTGACTCTGCcatgtatatttttctgtgtaaGCCACTGggcatgtgtatttgttttgtaagatGTCAGcagaaaaagcacatttcatATTCTGTAGTTCCTAGTATAAATTACAGTTTGATAGGATGGAGCTTTCTGGCCACAGTGTTTAATTATTCTAAAGTATTGTCTGCTGGCATGCTGTGattttttgaaatgttatttaagttaaaacaatgttttctatttttgtaaaagtttttaaatacatatatttttttacatttattcttgGGGACAATAAAGCTTGAAAGAGAGAGCTTACTGTTGGCAAA

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K03172 TRAF1; TNF receptor-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019953 True 2510 mRNA 0.48 9 4142990 4164282

Neighbor

gene id symbol gene type direction distance location
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding downstream 9167 4106997 ~ 4133823 (-)
AMCG00019949 LOC107599025,LOC107725315 coding downstream 414464 3722895 ~ 3728526 (-)
AMCG00019950 NA coding downstream 436893 3675107 ~ 3706097 (-)
AMCG00019946 NA coding downstream 613354 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 645244 3496276 ~ 3497746 (-)
AMCG00019954 NA coding upstream 517 4164799 ~ 4172609 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 21023 4185305 ~ 4195180 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 90990 4255272 ~ 4263577 (-)
AMCG00019960 NA coding upstream 458135 4622417 ~ 4627869 (-)
AMCG00019964 fam78a,LOC106563259 coding upstream 591242 4755524 ~ 4766859 (-)
G59880 NA non-coding downstream 47006 4095350 ~ 4095984 (-)
G59862 NA non-coding downstream 103072 4039515 ~ 4039918 (-)
G59853 NA non-coding downstream 346284 3780898 ~ 3796706 (-)
G59852 NA non-coding downstream 467976 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 495656 3646039 ~ 3647334 (-)
G59907 NA non-coding upstream 144394 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 457695 4621977 ~ 4622357 (-)
G59932 NA non-coding upstream 483740 4648022 ~ 4651002 (-)
G59938 NA non-coding upstream 504068 4668350 ~ 4668869 (-)
G59939 NA non-coding upstream 504676 4668958 ~ 4669158 (-)
G59806 NA other downstream 662881 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 957025 3166237 ~ 3185965 (-)
G59720 NA other downstream 1031643 3107801 ~ 3111347 (-)
G59712 NA other downstream 1108655 3031856 ~ 3034335 (-)
G59545 NA other downstream 1635970 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 848162 5012444 ~ 5061512 (-)
G60118 NA other upstream 1099632 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1112380 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1127308 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1995295 6159577 ~ 6172474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location