AMCG00019954


Basic Information

Item Value
gene id AMCG00019954
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4164799 ~ 4172609 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019954
CTGAAATGCTTTGTGTCAGATATGGTGCAAAAAGAAGCAGAGTGTGAGAGCACGTTTAACTTCACTCTGTATTCAGTAGGTCTCATGGCTGCAGTTTGTAATACAGAATGAGTGGCAGTGCTCAAGAGTAATGTGTGAGGCTTCCCTGTACTTCACAGCATGAACGGAAACAAAAAGGCCTAAATCCCTTTTCTTGACGTCACAACACTATGAACAGCAAGGTGAGCCCAAAGCAGgtcAGTGAAAATGAAGGCCAAAGTGAGAGGAAGAGAAATGACTGTCTATTTGAGCAGTTAGGGTGTACCTTCAAGGGAGGAAGGTCAAAAATGAAGAACCACGAAGCTTATGCGTTCCCCTTCCACGCCAAACTCCTGCTGGAGGAGGTGACGCGGCTGGAGAGGGCCAGCCGGGCGTGTGGAGGCGTTCTGGAGGACGTGAAGCGAGTAGAGGCCAGCGTGTCGGAGCTGCGGGCTGCCCCCTGCACAGGAACGCACAGGACGCTACAGGAGCTGAGCGTGGCAGTGCACTCTTCACAGACTCACATCCCGAGTCTGGCAAGCAAAGTAATTGCCTTAGAAAACAAATTGGCCCTGACTTGCAAGGCCTTCGAGGAGTGCGATGCGCTGGTAAAGACCAACACTAGACAGCTTGATTCAAATAAGCGGTCATTAACGGATCTGCAGGAGAAGATTAGGATCTCTGTCCTAAATCATAGTAACCTGGAGGACTCGATGGTGCACAGCCTTGTCCCAAACCATTCACTGCTCAACAGTTTCCAGAGACCGAGTGAGAGCGGAAACGCTGCGTTTGGGGTGTCGCAGTTCGCCCCTTTGGACGAGTTCTACAGCAGGCTCACACAGTTTGTGCACAATGACACGCTGTTTGTAAAGACTGAATTTTAACCCCACCATAGGCAATATGGACTGGATGAATTATTTTGGGAAAGCAAGGCATTTCATTAGCAAGTTATTTAAGAATGTAACTTGCAGTTTATATCTTCCCAAACATTCCCAGTCCAATTCATTTGTAAAATTGGTTTAGGGGGTAAACAAaacttaatttgtgttttattataaggAGGAAGTGGCTATGTTGGGGATTACACTCCAGGTGTAACAATCAACCATACCACAGAGCAGgatacattttgtcattttgtttaataattatgtCATGATATTCCTGTTCTTCTGTCATGCTATTGTTTCCATGTTTAAGTGAAACACAGGTTTTTTCCCAGTGGGGAAAAGCAATAAGGGCAATCTCAAACCCCTTTCAAGTAAAAATTCCAGTCTAGTTTGCATTTTTGCTCTGTCGAGTGGTATAAGAGGATAGCTACACTGTAACTATGAAGTGTAGAGGGACCTAAGCACAGAGCAACTGAGGAATCAGCCAAAAGTCGAGAAGGTACTGcaatttttcatttcaacttTCTTAGAGCTGCTAGAAAGTACTGCCATCATTTTCATATTGAGCATTGGTGTTGTTGGTCACATGATCTCCATTACCTGAACTTTGCTTTTGGAAAAAGAGCATtatagtagtagtggtagtcgTAGTTTATGATGTTGATGTTCTTTGAAACAAGgtttaatgttaatatataaattaaaagatgCCTGCATGCCTACAATGACTGCATTTCAACTTTCAAATAATGTTCATTAGagttatatttatagttatatataaggtatattttattggatttatgcctatttattttacttgcatttttttttaattttcatttgcaaatatgtatatactCCCTGATACATTAGACAGCTGTTCACAGTCAGGTTGGTGgaataaatacagatttgatCGACCAAGCAATTTAATTCGATTATATTTCACAagttcaaaacatttgattcaaATAGGTATTTCCAAAATCTCAGTAGGCCTATAATGCAATAAGAAATAGCCCATATTTGCAATTGTATACAACAtcgtttaattaatttgaaacactGATTAATAATCTCACCAGGATATATATTCACTCATTTCAGAAACAAACCCATGTtattgcaaaaatgtataacaacaaaacaaacaaaaaatgtttacattatacGTTTTTATTCCTATTCACATGCTGTTAAAGCAAACCATTCTGCTTTAATCTGTGCAGctgcattgtttgttttcatgcaatAAAAACCGGTCTGTGCCTCTCTGACTTATTTTTCCGAAACATTAAACTTGGTGAGTACTCTGCAAGGCGTGTAATGCATTAAATATCTTCAGTCCAAGCCAGATACAGTATTTCTGTAACAACATTCTCCACCCCCTGCATACAGAAATAGGAAAGTAGAAAGGGGGGAGTGGCATGCTTTCAtaatatgaattttaattgttctttttgttttctttgcaaatcATGAGGATTGCTAACTTCTTGTATTATAGTCTAAGCCgtatattcataaatatatacattcaaaggctattgcactttatttaatcacgtgtg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019954 True 2482 mRNA 0.40 4 4164799 4172609

Neighbor

gene id symbol gene type direction distance location
AMCG00019953 NA coding downstream 517 4142990 ~ 4164282 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding downstream 30976 4106997 ~ 4133823 (-)
AMCG00019949 LOC107599025,LOC107725315 coding downstream 436273 3722895 ~ 3728526 (-)
AMCG00019950 NA coding downstream 458702 3675107 ~ 3706097 (-)
AMCG00019946 NA coding downstream 635163 3523288 ~ 3529636 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 12696 4185305 ~ 4195180 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 82663 4255272 ~ 4263577 (-)
AMCG00019960 NA coding upstream 449808 4622417 ~ 4627869 (-)
AMCG00019964 fam78a,LOC106563259 coding upstream 582915 4755524 ~ 4766859 (-)
AMCG00019968 uck1,LOC102793675 coding upstream 702977 4875586 ~ 4886898 (-)
G59880 NA non-coding downstream 68815 4095350 ~ 4095984 (-)
G59862 NA non-coding downstream 124881 4039515 ~ 4039918 (-)
G59853 NA non-coding downstream 368093 3780898 ~ 3796706 (-)
G59852 NA non-coding downstream 489785 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 517465 3646039 ~ 3647334 (-)
G59907 NA non-coding upstream 136067 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 449368 4621977 ~ 4622357 (-)
G59932 NA non-coding upstream 475413 4648022 ~ 4651002 (-)
G59938 NA non-coding upstream 495741 4668350 ~ 4668869 (-)
G59939 NA non-coding upstream 496349 4668958 ~ 4669158 (-)
G59806 NA other downstream 684690 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 978834 3166237 ~ 3185965 (-)
G59720 NA other downstream 1053452 3107801 ~ 3111347 (-)
G59712 NA other downstream 1130464 3031856 ~ 3034335 (-)
G59545 NA other downstream 1657779 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 839835 5012444 ~ 5061512 (-)
G60118 NA other upstream 1091305 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1104053 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1118981 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1986968 6159577 ~ 6172474 (-)

Expression


Co-expression Network