AMCG00019955 (si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318)


Basic Information

Item Value
gene id AMCG00019955
gene name si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4185305 ~ 4195180 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019955
ATGAAGAGGATCCACGCCTTGACCATCCAGGCAAACTATGAGCTGCGCATCGACCTAGAGGACTTTGAGAACAGCACGGCCTTCGCTCAGTACGGTACATTCGGAGTGGGGCTGTTCTCAGTGGACCCCGACGAGGACGGATACCCTCTGACTATCGCTGACTACTCGGGAACTGCAGGTGATTCACTGCTGAAACACAACGGCATGAAGTTCACCACCAAGGACCAGGACAACGATCACTCCGAGAACAACTGTGCCTCCTTCTACCACGGCGCCTGGTGGTACCGCAACTGTCACACCTCCAACCTGAATGGACAGTACCTGAAGGGGCACCACACCTCCTATGCCGACGGCATTGAGTGGTCGTCCTGGACTGGCTGGCAGTACTCCCTCAAATTCTCTGAAATGAAGATCCGCCCGGCCCGGGACGACAataagtga

Function

symbol description
fibcd1 Enables chitin binding activity. Predicted to be involved in cell adhesion. Located in membrane.

NR:

description
fibrinogen C domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019955 True 441 mRNA 0.56 2 4185305 4195180

Neighbor

gene id symbol gene type direction distance location
AMCG00019954 NA coding downstream 12696 4164799 ~ 4172609 (-)
AMCG00019953 NA coding downstream 21023 4142990 ~ 4164282 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding downstream 51482 4106997 ~ 4133823 (-)
AMCG00019949 LOC107599025,LOC107725315 coding downstream 456779 3722895 ~ 3728526 (-)
AMCG00019950 NA coding downstream 479208 3675107 ~ 3706097 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 60092 4255272 ~ 4263577 (-)
AMCG00019960 NA coding upstream 427237 4622417 ~ 4627869 (-)
AMCG00019964 fam78a,LOC106563259 coding upstream 560344 4755524 ~ 4766859 (-)
AMCG00019968 uck1,LOC102793675 coding upstream 680406 4875586 ~ 4886898 (-)
AMCG00019970 NA coding upstream 703760 4898940 ~ 4908555 (-)
G59880 NA non-coding downstream 89321 4095350 ~ 4095984 (-)
G59862 NA non-coding downstream 145387 4039515 ~ 4039918 (-)
G59853 NA non-coding downstream 388599 3780898 ~ 3796706 (-)
G59852 NA non-coding downstream 510291 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 537971 3646039 ~ 3647334 (-)
G59907 NA non-coding upstream 113496 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 426797 4621977 ~ 4622357 (-)
G59932 NA non-coding upstream 452842 4648022 ~ 4651002 (-)
G59938 NA non-coding upstream 473170 4668350 ~ 4668869 (-)
G59939 NA non-coding upstream 473778 4668958 ~ 4669158 (-)
G59806 NA other downstream 705196 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 999340 3166237 ~ 3185965 (-)
G59720 NA other downstream 1073958 3107801 ~ 3111347 (-)
G59712 NA other downstream 1150970 3031856 ~ 3034335 (-)
G59545 NA other downstream 1678285 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 817264 5012444 ~ 5061512 (-)
G60118 NA other upstream 1068734 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1081482 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1096410 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1964397 6159577 ~ 6172474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_06855220_06945434 FCN2, FIBCD1 coding CI01000010 null 6855220 ~ 6945434 (+)