AMCG00019968 (uck1,LOC102793675)


Basic Information

Item Value
gene id AMCG00019968
gene name uck1,LOC102793675
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4875586 ~ 4886898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019968
ATGGCCTCTGCCGGGCTGCCGACGCTGTCCGATCGGCCTCGTCACCGGCCTTTCCTGATAGGCGTGAGCGGGGGCACCGCCAGCGGAAAGTCCACAGTGTGTGCGAAGATCACGGAGCTGCTGGGGCAGAACGAGGTGGACCATCATCAGAGGAAAGTGGTCATCGTGAGCCAGGACTGCTTCTACCGAGTGCTGACCTCCGAACAGAAAGCCAAGGCGCTCAAGGGCCAGTACAACTTTGACCACCCTGATGCCTTCGACAATGAGCTGATGTATCAAACCCTCAAAGACATCGTGGAGGGGAAGGTGGTGGAAGTTCCTACATATGATTTTGTCACCCATTCGAGATTGCAGCACACAATCACAGTGTACCCTGCGGACGTGGTGCTCTTCGAGGGCATCCTGGTGTTTTACTCGCAGGAGATCCGGGACATGTTTCATATGAAGCTCTTCGTGGACACGGACTCGGACGTCAGGCTCTCGCGCAGAGTTCTCCGAGACATGAAGAGAGGCCGGGACCTGGAGCAGATCCTCTCCCAGTACAccatttttgtaaaaccagCATTTGAGGAGTTCTGCTTGCCGacaAAGAAATATGCAGATGTTATCATACCTAGAGGCGTTGATAATATGGTTGCCATCAACCTGATCGTGCAGCACATCCAGGACATTCTGAATGGAGACCTCTGCAAGTGGCAGCGCGGGGCCGTGAACGGGCACGGCCAGGGCAGGGGCTACAAACGGGCGCTCTCCGAGCAGGGTGACGTGGCTAGTGGGGCAGTAACCCCCACAGGGAAACGGGTGCTACTGGAGCCCAGCAGCCGACCCCACTAA

Function

symbol description
uck1 Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK1 (uridine-cytidine kinase 1).

NR:

description
PREDICTED: uridine-cytidine kinase 1

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019968 True 834 mRNA 0.57 7 4875586 4886898

Neighbor

gene id symbol gene type direction distance location
AMCG00019964 fam78a,LOC106563259 coding downstream 108727 4755524 ~ 4766859 (-)
AMCG00019960 NA coding downstream 247717 4622417 ~ 4627869 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding downstream 612009 4255272 ~ 4263577 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding downstream 680406 4185305 ~ 4195180 (-)
AMCG00019954 NA coding downstream 702977 4164799 ~ 4172609 (-)
AMCG00019970 NA coding upstream 12042 4898940 ~ 4908555 (-)
AMCG00019972 sh3glb2 coding upstream 43605 4930503 ~ 4940565 (-)
AMCG00019971 NA coding upstream 82292 4969190 ~ 4983211 (-)
AMCG00019975 NA coding upstream 105738 4992636 ~ 5005983 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding upstream 178742 5065640 ~ 5069039 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 26790 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 75317 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 120394 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 201977 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 203418 4671780 ~ 4672168 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding upstream 98783 4985681 ~ 4989055 (-)
G60089 NA non-coding upstream 231453 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 266160 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 275108 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 276866 5163764 ~ 5163995 (-)
G59806 NA other downstream 1395477 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1689621 3166237 ~ 3185965 (-)
G59720 NA other downstream 1764239 3107801 ~ 3111347 (-)
G59712 NA other downstream 1841251 3031856 ~ 3034335 (-)
G59545 NA other downstream 2368566 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 125546 5012444 ~ 5061512 (-)
G60118 NA other upstream 377016 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 389764 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 404692 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1272679 6159577 ~ 6172474 (-)

Expression


Co-expression Network