AMCG00019970


Basic Information

Item Value
gene id AMCG00019970
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4898940 ~ 4908555 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019970
agaagaacagaccaaagatggacaaaggaagctattgaatggatcccaagagactTAAAATGAGCAAGACCACCAACACATAAATGATGGGAAGAAGTATATAGAAGCTTGGCTGGGTGTGATCTGGAAAAGATCTGTACATTGACACAAATGGAGACATCTTAGAGAGGCTtcgtccagcagtggatcaatttAAAGGCTGATGATCAAgagatataatatatacatgaaatatgaaatgagACATGGGTGTGTTAATTagcttttacataatttaaaaaatgtggaaTGCACACTTAGGGATTTCCATACCCAGATCCAagttcctttcttttttaatatatacacacttgaATATACGATTATTTGAAAAGGACCGTGCTAGTCTGTCTTGATTGTGACTCTTTAGAACGCCTTGTAATTTTACTGCAATTTGCTGCTGCCATTTCCTCATGAAATAACTGCAGAAGTGTCTCCCCTAGCTAACCACAGCATTTAGTTAATGATAATTAtagtgtctctctcactctcaaaTTCAGATTTGTACTTTCGGTGCAGTACCTTGGGAAAGACCCATTGACGATCTTCCATTAGACAGGAGATAGCTCTGTGGGGGAATGAAAGGCAGAAgattatacaatataaatacaaataatgtatcaaGACCTGTATCAGTGGTAGAGGCAGCAGTATAGTAAACCGTACATTTTAGGATGaacaattactttattttccaaCAGAGGTGAccgtaaaataaatgtaatttgccaGCTAAGCtgaaaacattgcatttgtaCAATCAATATCTTTGAATGAGTTTATGCCATCTCTTACCCCTTCACCCTTTAGTGCTATTTAAAATCCAGCACAGGTATTTATGTCACTCACAAAGAGAGCATTGACTCAAGGTATCATGTGTAACTCTGTTCTACAGCATCAAtatgttttctcttcttcccATCTTTGTTACTCTAAGCATGTGTGTTAATGTGCTTCACGGGTCTCTCTCTGAAACACTGCAGCCGATTCCTCCACTGACTGTCAGTATGTGCTTGTTGACAGTATTCGTGGATGGAACTGTGTTGTTCCTCTTGAAAGAGAAATAACGGGTCAATCAATGATTGGTAACCTGGGTACACAGAGCTGAGATGAATTAATTTGCAGTGAAGAtcttaaaacaataacacaaaatggaTGATGTTAGGTTTGTCTAGAATCCACAGGCTTTCCTTTCCCAATAACAGTGGGTTTTTAGTATAATTTGGGTATTAGAACATTTGTCTTATCCCCCCAAAAAGTGTAGATTTgaggaattatatattttttatcgtcatgtataaaacaaattatacactGGCAGCTGCAGATTTCTGTGTGCCCCCCCACTCAGTGGAGAAAGGTCCGCGCTTAAATGACAAGGGACCAGCAGGATGCATCTCATCTGCAGATGAATGACATTTCAGTCTGTGCAAATTGGAGCCTCATGCCCAGCTGGTTTAATTTAGAGAGAAATAAATTGAGACTGCAGTTCTAAGGAGAGAGACTCTGATAATTGTCAGCTCCTTTTGCTGTAACAGTGTTTCCTAATTCCACTCCTGTAGACTACTATCCCGGGCTCAGGTATTCTTGAGCTATAATACATTGTAGGAATTAGGCTTTATGCCTTTCCACATGAACTCAAAATTAATTTGGGAATTTGGGGAAAGGGGGAAAAGTTGGAAAATGCCAAAGCCCCGGTTGGTAATGGGTCTCCAGGACTGGGATGAGGAACTGCTGCTTTAATGTGTCCCCGTTGTGCTGTCATCATGACTGAACTGGTACAATATCCCAGCACTCATCACTTCTCTTGTTGCTGTGTGGCTTTGCAGCTCTGGAGTGAGGAGGTGGACAAAGCGGAGCACGAGCTACGCGTTGCGCAAACGGAGTTCGACCGCCAGGCAGAAGTGACACGGCTACTGCTGGAGGGTATCAGCAGCACACACTACATGCAGGACCTACAGAAACAGCTGGGCAGGTTCCCCAATACCTTCGGTGTCAACACCAACACCGGGGCCCCGGCCTCTCCTTCTGCTGCTGCCACCCTCCCAGTGATCCCCACCCCCGGCGGCACGGGCGCCAACTCCCTGGAGCCCGACACCCTGAAGATCGAGGAGGTCCAGCCGCCAGCCACCGGCACCCGCAAGGCCAAAGTCTTGTATGACTATGACGCGGCTGACACCAGTGAGCTCTCCTTATTGGCGGACGAGCTGATCACGGTGTACACTGTACCAGGGATGGATCCTGACTGGCTGATTGGAGAGCGAGGAAACCAAAAAGGGAAAGTACCCGTTACTTATCTGGAGCTGCTGAGCTAAAGGGGACAGACCCACGGACGGATGGACGGACAGGTTATGAAAATTAGgcagtcaaaaataaaaacatccctgCAATTTACAGTTCTCTGGTCAGCTCAGAGTGACAGTTTGGGTGGCGCCCCGATAGCAGAGGGGGAACTCGGCGCCTCCCGGTTCTCCGTCTTTTAAAAGTTAACAAACCTAAATGCATTGTTCTATTCTGCAGAGTTACCTGAGCTCAGATAAATGCAGCTGCTTGTCATTTCCTTTTGAACGATTAGATGCTCACCCAGgctttgtgtgtattttcagtttagACTTGACCCTCTTTGGGGCGAATGCTGTGAATAGCGTGATTACTTCAGACCAAACGCAGGTCTTTCAGATGGGCCCCCCCACTCACTACTCTGACGCAGAGATCTGTACGATGGAGTGACCAAAACTGAGTTTTCCTATCTAAACTGTCTCCAATAGAGCTGTTACTAATCGGCTGTTTTGCATTGATGCCGATCAAAGACGACACGGTCTGCATCCCAGTTGCCATGGCCCTCTCAGATTCTCATCCATAGGAAAGAGCATTTGATGTGatcttttattgtttatttgttatttattcacttCTTCAGAATCCAGGGGTTTATCATCGATCAACTGATGcagttcaatatttaatattccaaAACGACCAGTTCCCcagaaatgaaggaaaacattatagttttaatgttatatatgtatatgtatgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019970 True 3084 mRNA 0.43 5 4898940 4908555

Neighbor

gene id symbol gene type direction distance location
AMCG00019968 uck1,LOC102793675 coding downstream 12042 4875586 ~ 4886898 (-)
AMCG00019964 fam78a,LOC106563259 coding downstream 132081 4755524 ~ 4766859 (-)
AMCG00019960 NA coding downstream 271071 4622417 ~ 4627869 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding downstream 635363 4255272 ~ 4263577 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding downstream 703760 4185305 ~ 4195180 (-)
AMCG00019972 sh3glb2 coding upstream 21948 4930503 ~ 4940565 (-)
AMCG00019971 NA coding upstream 60635 4969190 ~ 4983211 (-)
AMCG00019975 NA coding upstream 84081 4992636 ~ 5005983 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding upstream 157085 5065640 ~ 5069039 (-)
AMCG00019983 NA coding upstream 223491 5132046 ~ 5153053 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 50144 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 98671 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 143748 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 225331 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 226772 4671780 ~ 4672168 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding upstream 77126 4985681 ~ 4989055 (-)
G60089 NA non-coding upstream 209796 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 244503 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 253451 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 255209 5163764 ~ 5163995 (-)
G59806 NA other downstream 1418831 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1712975 3166237 ~ 3185965 (-)
G59720 NA other downstream 1787593 3107801 ~ 3111347 (-)
G59712 NA other downstream 1864605 3031856 ~ 3034335 (-)
G59545 NA other downstream 2391920 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 103889 5012444 ~ 5061512 (-)
G60118 NA other upstream 355359 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 368107 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 383035 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1251022 6159577 ~ 6172474 (-)

Expression


Co-expression Network