AMCG00019971


Basic Information

Item Value
gene id AMCG00019971
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4969190 ~ 4983211 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019971
GCGGCGCGCGCGGTGCGGGGCGGCTGCAGACGGAGGGGCTCGCGGTGCGGCGGCTGTTTCACACACTGCCATGTCAACGCCCAGAGTGAAGAGTGAAGAGTGAAGAGTGAAGAGCAGCGATGAGTCAGAGCGAGATGGACGCCCCGGAGCCGGCGGCGGCGCACCGCTCTCGGACGGTGAAGAGGAGGCTGCTGTGGAACCTGCGGCAGCAATGGAAGCTGCTGGGCCTGTTTGAGATTGACAAGGGCCATGAGTTCTACGACTTGACCTGCATGATGAAGGAGGGCCTGTCTGCCTCCGTGCAGAACACGATCGACAACCCGGCCCTGGATGAGCTTAGTGAAGAAGATTTTAAAGAGGAAGTCACTCAGGTACACGAGGGCTACAAGATGCAGACGTTTGCGGGACCCGTCTTTGCCCGACTACGCCGCTCCCTGGGGATGTCCGAGAAGGATTATCAGCATTCCCTGTCCTGTGAGGGCTTCTACCTGCAGTTCATCAGCAACTCCAAGAGCAAAGCCGACTTCTTCCTCACGAACGACAAGAGGTTTTTCCTGAAAACGCAGAACAAACGAGAAGTGAAATTCCTCCTGTCCAACCTGAAGATCTACATTCAGCATCTGGAGAGCTACCCCCATTCCCTGCTGGTCAAGTTCCTGGGTGTCCACAGAATCAAAATCCCACGTCAAAGAGagAAATACTTCATTGTGATGCAGAGTGTCTTTTACCCTGATGAGAGGATACATGATCGATATGATATAAAGGGCTGCCAGGTGAGCCGATGGACCGACCCAGCTCCTGAAGGCAGCCAGATCATTGTGGTCCTGAAGGACATGAACTTCGAGGGAAAATCCATATCTCTGGGGATCTCAATTCGTAGGATATCCAGTGGTTTAATGAAATGTGTGGCCCTGCCCATGGTGCTCACTTCAGCCAGATGTTGCATGGCGCTGTGTGGACCTGTCCTGCCCTCCTCTGACCCACGGTCCCCTGTGCCCACAGACCAGCAGCGCTCCTGGCTCCTGCGGCAGATGGACATCGACACAGCCTTCCTGCGGCGCCTCAATGTGCTGGACTACAGCCTGCTGGTGGCCCACCAGCCCCTGCACCATGACGAGAAGGGCCAGAGACACTCCTTAGCCAGCGTCATCATGCGCACCAAGAAGTCAGTGATCACCGGGAGCAGCCCCATTCACTCCAGCTCCCCTCCGGTTCCGGGCGTGGTGGAGGAAGACTCCGCGGTGCTCGTGTCGGAGATGGAGGACGGCCTGGACCGCTGCCGGGTGCGAGAGGTGCTTCCCGGCCACGGAAGCAGCCCCCTGCGGATGCTGGATGGCCCCTCCGGTCCCAGCGCGGAGCTGCGGGAGTTCCAGGCGCAGAACCGCCGGCTGCTGCCCAACTTCAAGAACCCCCTGCATGTCATCGATGGGCCCGAGCTTCGGTACTTTGTGGGCATCATTGACATTTTCACCGTCTACGGCTTCAAGAAGAAGCTGGAGCACCTGTGGAAGTGCCTGCGCTACCCCGGCCAGGCTTTCTCCACTGTGAGCCCCAGCGCCTACTCCAGCCGGCTGTGCCAATGGGTCGAGGCTCACACCAATTAGACAGAGACGGCTAACCCTCCACCTGGGGGCTCCTGCGCACAGGCATGGCCACTTCTTGGAAGNNNNNNNNNNNNNccccccccccccccccc

Function

GO: NA

KEGG:

id description
K13712 PIP5KL1; phosphatidylinositol-4-phosphate 5-kinase-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019971 True 1696 mRNA 0.59 11 4969190 4983211

Neighbor

gene id symbol gene type direction distance location
AMCG00019972 sh3glb2 coding downstream 28625 4930503 ~ 4940565 (-)
AMCG00019970 NA coding downstream 60635 4898940 ~ 4908555 (-)
AMCG00019968 uck1,LOC102793675 coding downstream 82292 4875586 ~ 4886898 (-)
AMCG00019964 fam78a,LOC106563259 coding downstream 202331 4755524 ~ 4766859 (-)
AMCG00019960 NA coding downstream 341321 4622417 ~ 4627869 (-)
AMCG00019975 NA coding upstream 9425 4992636 ~ 5005983 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding upstream 82429 5065640 ~ 5069039 (-)
AMCG00019983 NA coding upstream 148835 5132046 ~ 5153053 (-)
AMCG00019982 NA coding upstream 175148 5158359 ~ 5159320 (-)
AMCG00019985 sptan1 coding upstream 184155 5167366 ~ 5206880 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 120394 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 168921 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 213998 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 295581 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 297022 4671780 ~ 4672168 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding upstream 2470 4985681 ~ 4989055 (-)
G60089 NA non-coding upstream 135140 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 169847 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 178795 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 180553 5163764 ~ 5163995 (-)
G59806 NA other downstream 1489081 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1783225 3166237 ~ 3185965 (-)
G59720 NA other downstream 1857843 3107801 ~ 3111347 (-)
G59712 NA other downstream 1934855 3031856 ~ 3034335 (-)
G59545 NA other downstream 2462170 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 29233 5012444 ~ 5061512 (-)
G60118 NA other upstream 280703 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 293451 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 308379 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1176366 6159577 ~ 6172474 (-)

Expression


Co-expression Network