AMCG00019976 (fam102a,LOC105891604,LOC108430372,LOC103389177)


Basic Information

Item Value
gene id AMCG00019976
gene name fam102a,LOC105891604,LOC108430372,LOC103389177
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5012444 ~ 5061512 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019976
ATGAATTGTTATTTAAAGGACACCACATCAAGGCCAACCCATCAACTGCATCAGTGCAGTATCCATAGCAACAACGCCCGGTTTCTCACGGTGCTTATTACTGGCGCAGCTCGGGCATCCAGGCCGAGAGAGAGACGTGTCGGGAGGGCGGGGCTTGTGGCCTCGCAGGGAGGGGATGGGGTTTATACCGAGCCGGGCGGCGGGCTGCGCGCAGTGGAGGGAGGGCCTGGGTGGAGTGGCTGTGTCGGGGATCTTGCTTCGGTATCCGTGCTGGCGGTGAGACTGGGGCGCCGTGGATTCAGTGCAGGCGCGGCGAGCCGGGAATCAAACCACAACAACGCCGAGCCGCTTCACTCCCCGGCTGACAGCCGAGCCGAAGCCCAGGACAGGGTCGCCTGTTCGGTACACAGTCACAGCGCTGACCGCGTTACGTTTGCACAGGAAAGCCCCTGTTCACCCCCGTCCTGCCCGACTGCGCAGACAGACTGCCCGGTCCACGCCGCGTTAAACCAGaagaagaaattcaAGTTTCAGACCCACTTCACGCTGGAGGAGCTGACGGCGGTGCCGTTTGTCAATGGGGTCCTCTTCTGCAAAATCCGCCTGTTGGACGGAGGGGATTTCGCCACATCATCTTCCAGGTActag
>TU75113
GTGGCTGTGTCGGGGATCTTGCTTCGGTATCCGTGCTGGCGGTGAGACTGGGGCGCCGTGGATTCAGTGCAGGCGCGGCGAGCCGGGAATCAAACCACAACAACGCCGAGCCGAAGCCCAGGACAGGGTCGCCTGTTCGGTACACAGTCACAGCGCTGACCGCGTTACGTTTGCACAGGAAAGCCCCTGTTCACCCCCGTCCTGCCCGACTGCGCAGACAGACTGCCCGGTCCACGCCGCGTTAAACCAGATCTGCTGACATCGTCCAGGCAATTCACAGAGATGCTGAACCAATACAGAATCATTAAGAAAAATTTCCAAGCTCCAGATTAAAATCGTCACGACCCCCAATGCTCCAAAAATAAActcactttattttagtttgacgtttattttattttattttttgttcatttttaaggATACATCCACCATTCTTATTATTGATCTATTATTTATTGGGGCATTCAAGTGAGATTTTAACTGAACTGACACGGGACTCTCTCGTCAATGGCGTTtttaatgaagaagaagaaattcaAGTTTCAGACCCACTTCACGCTGGAGGAGCTGACGGCGGTGCCGTTTGTCAATGGGGTCCTCTTCTGCAAAATCCGCCTGTTGGACGGAGGGGATTTCGCCACATCATCTTCCAGGGAGGAGGTGCTGGAGAACTGTGTTCGCTGGAAGAAGCGGTTCTCATTTGTGTGCAAGATGAGCGCCAACCCCACCACGGGCGTGCTGGACCCCTGCATCTGCAGAGTGTCTGTCCGCAAGGTGAGAAACCCACGCACTGCAGCTCCAACCATACAGAACTGGGGGATCTCTGAGCTTCATGCTACTTGTTTGATAAGCCTAGAG

Function

symbol description
fam102a Orthologous to human FAM102A (family with sequence similarity 102 member A).

NR:

description
PREDICTED: protein FAM102A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019976 False 648 mRNA 0.61 2 5060491 5061512
TU75113 True 861 TUCP 0.51 4 5012444 5061277

Neighbor

gene id symbol gene type direction distance location
AMCG00019975 NA coding downstream 6461 4992636 ~ 5005983 (-)
AMCG00019971 NA coding downstream 29233 4969190 ~ 4983211 (-)
AMCG00019972 sh3glb2 coding downstream 71879 4930503 ~ 4940565 (-)
AMCG00019970 NA coding downstream 103889 4898940 ~ 4908555 (-)
AMCG00019968 uck1,LOC102793675 coding downstream 125546 4875586 ~ 4886898 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding upstream 4128 5065640 ~ 5069039 (-)
AMCG00019983 NA coding upstream 70534 5132046 ~ 5153053 (-)
AMCG00019982 NA coding upstream 96847 5158359 ~ 5159320 (-)
AMCG00019985 sptan1 coding upstream 105854 5167366 ~ 5206880 (-)
AMCG00019984 LOC102792584 coding upstream 146261 5207773 ~ 5230138 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding downstream 23389 4985681 ~ 4989055 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 163648 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 212175 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 257252 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 338835 4673284 ~ 4673609 (-)
G60089 NA non-coding upstream 56839 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 91546 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 100494 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 102252 5163764 ~ 5163995 (-)
G60101 NA non-coding upstream 103755 5165267 ~ 5165488 (-)
G59806 NA other downstream 1532335 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1826479 3166237 ~ 3185965 (-)
G59720 NA other downstream 1901097 3107801 ~ 3111347 (-)
G59712 NA other downstream 1978109 3031856 ~ 3034335 (-)
G59545 NA other downstream 2505424 2494899 ~ 2507020 (-)
G60118 NA other upstream 202402 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 215150 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 230078 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1098065 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 1389110 6450622 ~ 6461428 (-)

Expression


Co-expression Network