AMCG00019989


Basic Information

Item Value
gene id AMCG00019989
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5297453 ~ 5301869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019989
CTAAGGTCCCTATCCCTGACATGTTCCTGTATTCTTTGCTGGTGGGGCTTGATGTCCAAGGCTTGCTGTTgttcatttttgcatttctatTGATAACTGACTTCCTCAAGAACAGGAACCCCAAGAACTTCCCCCCAGGACCCTGGGGTCTGCCCTTCATTGGGAATGTCTTCAACATTGACACAAAACAGCCACATATTTACCTAACTAAGCTAGCAGATGCCTAtggcaatgttttctgcatTCGTCTGGGAAAGGACAAAGCAATGTTTGTTATGGGTCACAAAATGGTGAAGGAGGCATTGGTCAATCAGGGAGAGAATTTTGTTGACCGGCCTTCTAGCCCAATAATGGACAGAATTTATTCCGGAAGTGGCTTGATCTTAAGCAACGGCCTCCATTGGAAAAAACAGAGAAGATTCACTCTCTCCACGCTAAGGAATTTTGGACTGGGTAAAAAGTCCCTGGAGTCTGTCATTGTCGAGGAGAGACGATTCCTTCAAGAAGCTCTTGAGAACGAGCAAGGAAAGTCTTTCGATCCTCACTTCATTCTTAATAATGCTGTCTCCAACATCATCTGTAGCATGGTCTTTGGACACAGGTTTGAATACAGTGACAATCATTTTCAAAAGTTGCTGAAGCTGCTCTCCGAATCTACTTACCTTGCAGGAACCATTTGGGCCAAGCTCTACAAAGCTTTTCCTGCTGCTATGAAGCTTGTTCCAGGgccacacaataaaatattcagcAACTACAAAGAGCTAATTGCGTTTGTGAAAAAAGAGTTGGAGAAACACAAGGAGAACTGGGACCCATCAGCCCCCCAAGACTACATTGACTCTTACTTGGAAGAAATATGGCAAGCCATGATGATTTGGACTGGGGTAGAGGTAGCAAGG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019989 True 899 mRNA 0.44 6 5297453 5301869

Neighbor

gene id symbol gene type direction distance location
AMCG00019987 NA coding downstream 62999 5234230 ~ 5234454 (-)
AMCG00019984 LOC102792584 coding downstream 67315 5207773 ~ 5230138 (-)
AMCG00019985 sptan1 coding downstream 90573 5167366 ~ 5206880 (-)
AMCG00019982 NA coding downstream 138133 5158359 ~ 5159320 (-)
AMCG00019983 NA coding downstream 144400 5132046 ~ 5153053 (-)
AMCG00019990 NA coding upstream 73997 5375866 ~ 5380964 (-)
AMCG00019994 rgs3a coding upstream 266649 5568518 ~ 5574686 (-)
AMCG00019996 NA coding upstream 302574 5604443 ~ 5615456 (-)
AMCG00019995 NA coding upstream 386662 5688531 ~ 5709863 (-)
AMCG00019997 NA coding upstream 467204 5769073 ~ 5787456 (-)
G60102 NA non-coding downstream 130163 5166359 ~ 5167290 (-)
G60101 NA non-coding downstream 131965 5165267 ~ 5165488 (-)
G60100 NA non-coding downstream 133458 5163764 ~ 5163995 (-)
G60099 NA non-coding downstream 134932 5162006 ~ 5162521 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding downstream 140260 5153058 ~ 5157193 (-)
G60179 NA non-coding upstream 169450 5471319 ~ 5523619 (-)
G60230 NA non-coding upstream 689076 5990945 ~ 5991184 (-)
G60231 NA non-coding upstream 693600 5995469 ~ 5995688 (-)
G60235 NA non-coding upstream 734696 6036565 ~ 6040665 (-)
G60237 NA non-coding upstream 753680 6055549 ~ 6055822 (-)
AMCG00019992 NA other downstream 4780 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 19162 5276662 ~ 5278291 (-)
G60118 NA other downstream 31528 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 235941 5012444 ~ 5061512 (-)
G59806 NA other downstream 1817344 3479782 ~ 3480109 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 857708 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 1148753 6450622 ~ 6461428 (-)
G60348 NA other upstream 1161679 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 1165402 6467271 ~ 6471434 (-)
G60516 NA other upstream 2138934 7440803 ~ 7562592 (-)

Expression


Co-expression Network