AMCG00019994 (rgs3a)


Basic Information

Item Value
gene id AMCG00019994
gene name rgs3a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5568518 ~ 5574686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019994
CCTGTTTCCTGCCTCAGCCTGTCCGCAATTTACCTAACTTTGCGAGGCATGGAAGATAGTCCGCCAGGCCAGGCCTCCGGTGAAAGCTGACACATCTCTCCCATGCTCAAACACATGGCCCTTTCAACAGTGCCCCACAGTCCCTCCTACATCCGTAGCTGAATACCAGGCTTTCGAGAGGGTTAGAGAGGGGGGCACAAatctcgactttcttctcttcACACCGTTGTCAGGCACTCGATTTTATTTTCTCCGCTGTGTGCTGGGATGGAAGTAGCTGCCTTGGGTTTGAGACACTGACATAAAACGCAAACTTCTGGGGGGAAAAATCGAAAAGACAAGCAGCTTAGAACTTGGATCAGGAGAAGTCGGTTCAGAGAGATGCCGTTTTTTCGTGCTGTGGCACCCAAAGCGCAATCCCATGAGTTTCACTCGGAGATGCTGCTTGGCGTACTGCAGGGGACCTGGAGAGCGGGGGGATTACACAGGAGACACACCATGAAGGAggCCAAAGACATGAAGAACCGCTTGGCTTTCCTAAGGAGGAGGAATGAATCTCCTGGTAGCAACCCAGCCAGCAAGTTGGACAAAGCCATGAAGTCTGTGAAGCCTACTCCAGAAGAAGCACTTAAATGGGGCGAGTCTTTAGACAAACTGCTGGTCCATAAATATGGTCTGGCTGCTTTCCGAGCATTCCTACGGACAGAATTCAGCGAAGAAAATCTGGAGTTCTGGCTGGCGTGCGAAGATTACAAGAAGATAAAGTCACAGTCTAAAATGGCATCAAAAGCCAAGAAGATCTTTGCAGAATACATCGCGATTCAGTCATGTAAAGAGGTCAACCTCGACTCGTACACCAGAGAACACACGAAAGACAACTTGCAGAGCATCAACCGGTCCTGTTTCGACCTGGCACAGAAGAGGATATATGGACTAATGGAGAAGGACTCTTACCCTAGGTTCCTTCGGTCAGAACTCTATGTGGACTTGGTTAACCAAAAGAAACCCAATTCAACGTCGTCATCATAAACAGCTCACCGGGGCCTGTTGGgtttattttgttccattttttttttttaagttacgGTTGAGAGACTTGAAATGGACTGGGAGCCGTATGTTTACATGGAACAGAGCCCCCCTCTGCAGCGCGTCTGGGAGAGGGGCTGGTGGGAGTGGGGCGGGGAGGCAGGGTAGAGGGGCGAGTCAAGCGCCGCTGTTGTCCAGTGTTACAGAACGTGGAAGCCATATCTCTGTACTGTGCAGCCCGCCCAGGTGCTTGTGAATGACaggagttttttcttttctttttcgtttTCTTGACGTACTGGAGTTGGGTGAACCGGAGAGATGAAACAGTCCGGTACTGTTTGGTCATGCTCTTCATCTTTTGCCCAATCTCTCCAAGCTGTCCTGCCCCCGTTAAGAAGCTGTTGGTACGACATGTGCGAAGGGgttccttttttcattattttttgtttgtttgcagttgtttttttatgttcattCGATTCAGTTTTCGTTCGTGATCAATAGTGATGGCATGATGACACACCGTAGTTCCGTGGACACACTGGGTTTCATCTGCTCCGCCAGCCCGTTGCTCGCTCATTCTCCGTGGGCGTGACGTCGCTCCAGCACACTGACACGGGCTCCTTCACATCATCATCTTCAAAGGACtataaaggaaaacaagatCCAACGGACcaaactgcagacacacaacactCCACTCAGTCAAACCAATTTGGAAGAACCTGCTGCCTGTCTCCAAAGACTATAAAAGcttcagatgtattttaaacaaataagcaaaccaTTTAGTTATGGGCTGGATGAGGCAGTATTCTCAGGATTACATGGCACTCTACTTTGAAGCttccaagctttttttttttttttttttaaacctgcacTCCTAGACAAATAGCGCTAAACCGTTAGGCTTCTGCCCTTTTCATAAACTATCTGGACCTGGATGGGTTTGCCTATTTATTTAGATAACTGCTGCAGGATGCTCAGTTTATAACCCCCACCCTGTCAGCCCCCCGGGTCCTTTGCTGTCCTGATTTTAAgtgcaatattttttaataagtttCATTTGAGCTAGACAATGGATTTGAGCTtgtattaactttatttttaagagttGTTGTACAAATTCTGCTTGAGGGTTAATATACAATTTaagataaaagaaagaaaaaagcaagtTCATTTTAACTGTGTGCTCCCTAGCAGCAGGCAGCTAGGGATTGAAGATGTATATATAGTTcctaagaaaactaaaaataattagGTTTCATAAATGTAACATGAAAATATGGTTGTAACTATGTAAATATGAGAGACTTAAAGCTATAAAATAACATGTTATGTTATAAAAGGGGAGGCATGAATGGACTTCCTCCCCTTGGTCATACACTGCTTGTAAGgagttttaagaaatgtattttatcattttcactGTTTACAATTCAAGGCATCTCCTACAATAGCAAGCAAAAAATGTCTGGTGTCATTGCAAAGggtaaataaactaaaaaccaaaacaatgaa

Function

symbol description
rgs3a Acts upstream of or within negative regulation of Wnt signaling pathway, calcium modulating pathway and somite development. Is expressed in brain; somite; and tail bud. Orthologous to human RGS3 (regulator of G protein signaling 3).

NR:

description
regulator of G-protein signaling 3 isoform X4

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0045812 negative regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019994 True 2559 mRNA 0.45 5 5568518 5574686

Neighbor

gene id symbol gene type direction distance location
AMCG00019990 NA coding downstream 187554 5375866 ~ 5380964 (-)
AMCG00019989 NA coding downstream 266649 5297453 ~ 5301869 (-)
AMCG00019987 NA coding downstream 334064 5234230 ~ 5234454 (-)
AMCG00019984 LOC102792584 coding downstream 338380 5207773 ~ 5230138 (-)
AMCG00019985 sptan1 coding downstream 361638 5167366 ~ 5206880 (-)
AMCG00019996 NA coding upstream 29757 5604443 ~ 5615456 (-)
AMCG00019995 NA coding upstream 113845 5688531 ~ 5709863 (-)
AMCG00019997 NA coding upstream 194387 5769073 ~ 5787456 (-)
AMCG00020003 NA coding upstream 603570 6178256 ~ 6181661 (-)
AMCG00020005 NA coding upstream 611545 6186231 ~ 6200034 (-)
G60179 NA non-coding downstream 44899 5471319 ~ 5523619 (-)
G60102 NA non-coding downstream 401228 5166359 ~ 5167290 (-)
G60101 NA non-coding downstream 403030 5165267 ~ 5165488 (-)
G60100 NA non-coding downstream 404523 5163764 ~ 5163995 (-)
G60099 NA non-coding downstream 405997 5162006 ~ 5162521 (-)
G60230 NA non-coding upstream 416259 5990945 ~ 5991184 (-)
G60231 NA non-coding upstream 420783 5995469 ~ 5995688 (-)
G60235 NA non-coding upstream 461879 6036565 ~ 6040665 (-)
G60237 NA non-coding upstream 480863 6055549 ~ 6055822 (-)
G60252 NA non-coding upstream 504923 6079609 ~ 6079871 (-)
AMCG00019992 NA other downstream 275845 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 290227 5276662 ~ 5278291 (-)
G60118 NA other downstream 302593 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 507006 5012444 ~ 5061512 (-)
G59806 NA other downstream 2088409 3479782 ~ 3480109 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 584891 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 875936 6450622 ~ 6461428 (-)
G60348 NA other upstream 888862 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 892585 6467271 ~ 6471434 (-)
G60516 NA other upstream 1866117 7440803 ~ 7562592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_09990989_09995182 RGS3A, RGS3 coding CI01000059 null 9989503 ~ 9995251 (-)