AMCG00020005


Basic Information

Item Value
gene id AMCG00020005
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6186231 ~ 6200034 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020005
GGATCTTTTATGCAAGTGCAGTGGGATTGCTTCAAAGAAAAGCGCAGGCACAGCGAGAGGGACAAAAATATCAACAGCACAGAGAGCGTCTGCAGCCAGAGAAAGTTTCCACGGCGATAAGATGTTCAACCACCATCACCAACAGCAGCAGTTTCACCAGCACCTCCGGCAGCTCCAGCAGCTCTTCCAGCAgcagccgccgccgccgccgccgcagcCACCTCCTCCGCCACCGCCGCACCATCcgcaccaccaccatcaccaccaccaagGAGGCCGGCCGATGCCCCCCCCAGCACAGCCTCCgccacccccacctcctccccGTATGGTGAACCTGTGCTCTGCCACCCAGGCCACACTCATCGGACCCAACCCCATGCTACAGGGAGCCCTGCTGATGCAGCAGATGCAAGggaaCCTGCGTGGGTTTGCGGTGGGCGGGCAGCAGTTCCCCCAGTTCTTCTCTGCCGGGACGAGGACATCCCTGCTGGGCCCTGCTCCCATGGGCGTGGCCATAAAGACCCCCCACATGGGCTTCCCCCCTCGGCACTTCCACCCCCACAACCGGCATTACAACAAGGACTTTGCGCGGATCCCGGAGCGGAAGAGAGAGAATGAGCAGCGGCCCCAGACCAGCGGGGAGCTCAGACAGGAGGGTAGCAGCGGTGGAGAGCCCAGTGACCGCACAGCCACAAGAGaGGACAGTGCTGCTGTCCCAGATGGCCAGTCTCAGCCCCCTGCTCGGCTGCTGGAGGAGCCCGCGACAAAACGGCAGAGAACAGAGGGATGCGAAGAGCAAATGGAAGAGACATCTGTGCCCGGTGAAACACCGAACGCAGACTACAAAAGCACAGTGGAAGCCACGCAGCCCGGAGACTGTGCCATTCTGGAGGAGGGAGGCAGTGCCGATGGGCCAGAGGCCGTGCAGTTTGTCGAAGAGAGCAGAGCGGCTGAGGTGTTGGGTGGAGGGGCCTCTCTGAAGGTGACCATCCAGCAGAGCAGCGAGAGCCGGGCCTTTAGCACCAGCGTGACGGAGATGGCCGGGAGGAGCAGTGACCGGGAGACAGACATGGAGGCGGCCAACAAGTTTTACTGCTACATCTGCAACATCAGCTGCCAGAACCAGCAGAACTTCCAGAGCCACATGAATGGCCTGGCCCACCAGCAACGAATGATGGAGATCCAGCACATGAGCAATGCCTGTCTGGTCACCCTGCTGCCCAAGGTCAAGGAATCCCTCCAAGGCTCGCGCAGGGACGGAGAGAAGAGACTGGGGCTACAGAGGTGGTGCTCCACGTGCCAGGCCCACTTCACTGGAGATCTGATTGAACACCGCAGGACCAGAGAGCACAAGCTGTCGAAGCACTCGTCCCGGCCGCTCTGCACCGTCTGCAAGCGCAACTTCCGGACACCACGCAAGTTCGTGGAGCATATGAAGTCCCCAGAGCACAAAGCGAGAGTGGAGGAGCTGAGTAACGAGGGTGGGGCAGACATTCCCGAGGAGCTGATTACGGTGGATGCCATCGGCTGCTTTGAAGGAGAGGAGGACTACGAGGAAGAGACCagtgagggggaggaggaggatgaccGCAGCCACCCCTCCCACAGCCAACAGGCAAGGCTCTCATGTCAAATCCCTCCTTGGCCCTGGTGTTTTTCCTCAGGCTGCAGTTTTGTGGTCCCGGTAGCTGGATTCCTCTGCAGGCTCTGCCACAAGTTTTACCACTTCGAGTCTACCGCCAGGCTGACCCACTGCAAGTCCCTGACGCACTTCCAAAACCTGCAGAAATACAAGGCCTTGAAGATCCAGGAAGATGCAGCTGCTGGGGAGATTTTgactgaggaggaagaggagccaGAGAACAGCAGCATTGTGGAAGACCATCAGGAACTGGGAGATGAGGAAAGCATTGCAACAGCGGAGCCATGCCCAGGCAACACACATGGGGACAGTGAGGATGATGGCTGTGGGACTGCTGGTTCCAACAGCTTGCCTCAGGACCAAGCTGCCCTCAGCAGCTCAAAGCCAGCTCCTGACATTCAGGACCCTGTCGAGGTCAACTCAGACAGGTCCAACAGAAGCACAACTGACTCTGATGGGTCCAATCCTAACACAGTTACTTTGCTAAACCCTGTCAAATTGAGCTCCAGCGGTTCAGTGCAAAATAAGACCACAATTCCTTGCAAAACCGACTCGATTCCAGAGAAGGTCAGATCTGTGAGCCCCTGCTGCATCATAATCGGGGATCCTGAAGGCAGTACCACTGGGGTACGTGTCTCGGAGTCCATTGACTCCCCACAGGGCTGCGAGAGAGAGAAGCCGACTCCCTCAGCTAATGCCCAGGCCCAGGCAGACAATGGGACCAGTGTGGAGACTGATGGCTGCCCAGACATGTCTCAGACCCAGGGACCTGTGGAAGAGGAGCAAAAGACCGAAGCTCAGCAGATAACCGCTCCACTTACAGATCAGGGGAGCTCCCAAGAtgatgagagagaggagactgcagccgaggaggaggaggctgggGGTGGGGAGAAGCCAGTGGCGGGACGTTCCCGGGCAGCAGCTCCTAGTGTTGGCAGGAGGAGATCCACAAGGACAACCAGGAGACGCTGAAAGTGGGGAGAGCTCTGACTGGAGAAAGGGGTATTAACCAGAGTGTTGTAGGGGGCTTAGTGTGGAAGTTACCTTCCTTTCTTGCAGAACTTTGAGCAAGGCCAAAGCAGTTAACAGATTTAAGAGTGCCCTGAGCAAAATGTAGATGGCCCAGACTTTAAGACAGCTGTTTAATAGGAAGGCTGAACTGAGGCTGGATATTTCAATGTGGATCTTAAACGTATTTCAGAGTTGTCACTTAGTTTCATAGCAGAACAAACGCCCAggttttgtaatgaaaatataacTGGGATTGCATCTGGGGTGAAACTGAGAGGGCAAGTTAGTTTTGAGTGTGTTTGAGTAGCTTAATTTAATGTGAAGTGTGAAAAACTAAAGTAATGATATCAGaagcattgaaataaatgtgtgaaatgacCCAGCCATAGATTTATATATCCAATCCAGCTCAAATGATGTCATTTGTACTGCAGTGGGGAGGTCAAATTCCAGAAATCGAGGCCTTCTGTGCTGTCTGAGCTCTAATCTGTTTGAACAAATTGCAAAGTTGCTTTGAACAAATGAAGCACTTTTCCCAGGTTGCTTGCCAGTAAAGCCTGTATTCATACTTAACAGACACTGTACTTGTAAAATGAAGTCTAAATTGGTTTCACAGTACCTGGGAAAGAGTGTAAAATAACTCCAGTCAAAATGAGGTGGGAAGTACCTTCACAGATACTACACCTCTAAAAATTGCCTCTGCACTGATTTTATCAAAGCTAAAAAGGTATTTTTATGTTCCTTGAGGGGGGGGAAACTAAGTATATGCTCTATCGAAATCTTTttagtactttatttttaaatgtaatatttaagttaatttcCGTTGATTCTGCTGGAAATCTTTGAATATCTGACCTAATCTGTGAATGTGTTCACCATAATGGTTGTCCTAGTTTTAGCTGCAGTTCAGTTTACTCCAGAAATGAAGTGAACCCATTCTGGAAATCGCTGTACATGGGGTAGTTACTAGAGTGACAAGCCCATGGGGTAATGGATTAAAGCCTCGGCTCTTGGAGTTCATCGTTGAGTTAGCCTTTCAACGccactgttttaatttgtgttagaACAGTGAAAGTGTTGGCCAGTTTGATTGGTCTGAATCAGTGATGGcctagttgttgttttttttaagttactgCAGGTCAGTTCCAGGATTGCTGTAGTTTGGATAAGTTGGAAGCTCTGCATATGCAAAGAGCAGAGAATGATGAAGCTttcagagcaaaaacaaaaactggagcCGTTGAGCTCAATCCTGGTGGAAAAACTGCTGCCTACAAGCAGGCCACCCCAGTGGGTCTGCTATTCGTGCTGATCTCTCATACTGGGTTATTCACCAAAGTCCATTTCAATTTTGGTACggtttctttttaaagttatgTTATTGAATAATCACATAACAGTGAAGTTTTACAAATGTGTAGAGAGTGAACATTGCCTGTTGTCTTAGCTTTGTCCCTCCTGGAGAGATTTTGGGCTGGCTTCCTCTGGTCAACCCTGAACGAATCCCATTGGGGACGGACACTTTGATCTCTGCCTCTCTCAGGGCAGTCCTGAGGTCACAGTTCTTCAATCAGTCCTCAATTTTGATCCGCAGACTGGAAGGGCTTCACTAGGCATAATAGGAAGTCCAGACTGAGGATGAAGAATTGTGTAATCTGTCTCTACAgctaaatgtgaatgtttagCATTACCTAGAAAAGTCTCAATATGAAATCAGATTACAACCTGGTGCTACATGACAGTACTTTTACAAATCAAAATCCAGATTCATTCTCATCTGATTAGTCATACCACTCTTAAGGCTAGgcatctgtaaaagaaaaaaaagtgccttTGGTATGCTCTGAAGAGAAGGGGAGACAGATGTTTGGTCTCTCATAGTGGGACTCTTCTCTCAAAACCAAAAGGAGTGCTTAGCCTATTTAAACACTGTAGCAGTTATGCTTGTAACAGGAGTAGACATGATAGAAACAGGTGGCCAAggttgtattattatcatcggTAATCAGACTGGACTGAAAATAAcgttttttttctgaagataGGCATGGATCTGCTGTTGAACCCCCGCCCCCCACATTAGAATTAATAGGGGTTCTCTCACAGAATACCCATTTAGTAAAGCGCAGAGTATTTTCCTCGAGGGAGCTGCTAAAAGGTAGATGGAGAGAGCAGCATTCAGACAGTCTGTGGCCGGTGGGGGGGGAAGTCAGCAGACAAGCCAGTTCACCGTCTTAGTTTAGTCACAGCAACTCTACTTTATTATAGAGATGCATTTGATGGTACAGAATTATTAGACACGAAAGCaaagctgtacatttttttttcttagtctATTTTTTTCCGTGAATAACTAAACTTTTTTTAGAATGACAGTTTGTAATATCTggatattattttctttgtttttgctgtacTTGAgtc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020005 True 5089 mRNA 0.50 15 6186231 6200034

Neighbor

gene id symbol gene type direction distance location
AMCG00020003 NA coding downstream 4570 6178256 ~ 6181661 (-)
AMCG00019997 NA coding downstream 398775 5769073 ~ 5787456 (-)
AMCG00019995 NA coding downstream 476368 5688531 ~ 5709863 (-)
AMCG00019996 NA coding downstream 570775 5604443 ~ 5615456 (-)
AMCG00019994 rgs3a coding downstream 611545 5568518 ~ 5574686 (-)
AMCG00020012 golga2 coding upstream 107499 6307533 ~ 6328630 (-)
AMCG00020013 NA coding upstream 128974 6329008 ~ 6333367 (-)
AMCG00020011 NA coding upstream 142753 6342787 ~ 6344692 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 369021 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 669539 6869573 ~ 6896989 (-)
G60271 NA non-coding downstream 31007 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 72083 6111349 ~ 6114148 (-)
G60258 NA non-coding downstream 86320 6099445 ~ 6099911 (-)
G60252 NA non-coding downstream 106360 6079609 ~ 6079871 (-)
G60237 NA non-coding downstream 130409 6055549 ~ 6055822 (-)
G60311 NA non-coding upstream 74235 6274269 ~ 6276032 (-)
G60317 NA non-coding upstream 100622 6300656 ~ 6358939 (-)
G60345 NA non-coding upstream 243241 6443275 ~ 6444733 (-)
G60356 NA non-coding upstream 287275 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 479144 6679178 ~ 6695776 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 13757 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 893558 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 907940 5276662 ~ 5278291 (-)
G60118 NA other downstream 920306 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 1124719 5012444 ~ 5061512 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 250588 6450622 ~ 6461428 (-)
G60348 NA other upstream 263514 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 267237 6467271 ~ 6471434 (-)
G60516 NA other upstream 1240769 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2612751 8812785 ~ 8828109 (-)

Expression


Co-expression Network