AMCG00020011


Basic Information

Item Value
gene id AMCG00020011
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6342787 ~ 6344692 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020011
AGCCATGAATGGGACATCCCGGAGTGGGAAGGCTTGTTGCCAAGGTATGAGCACTGCAGCTTCGTTCCTGAGAGCAGTCCTAACAGCCTGTGGGTGTTCGGAGGTGCTGAGCAAAGTGGAAATCgcaactgtgtgcaagtgataCAGCTAGAGACAGGATCCTGGAGGAGTGTGAAGGTGTGTGGAGTGCCCCCTTCACCTCGGACCTACCACACCTGCTCAGCGTGTATCGGGGACAGACTGTACGTTATCTCGGGGGGGGATCTGGGAGCCGCCCCGGTCGCTGACCCCCAGCTTCACGTCTTTGATGCAGCATCCCTCACATGGTCTCAGCCAGAAACCCAGGGGAAGCCTCCGCCCCCCAGGCATGGCCATGTCATAGTGGCTGTGGGGTCCAAGCTCTTTGTTCACGGTGGCTTATCTGGGGACAGGTTCCACAATGACATGTACTGCATTGACACCATGACCATGAAATGGGAGCGGGTGAAGGGGAAAGGAGACGTGCCCCCAGCCTGCGCCGCCCACTCCGCTGTGTCCTGGGGGAAGTGTGTGTACATCTTTGGAGGAATGACGGCTTCTGGTGCCCTTAACTCCATGTACAAATATCACATCGACCGTCAGTGCTGGACCCTCATCACATTTGATGGAGCCCTGCCTCCTAAAAGACTGGACCACTCCATGTGTGTTGTTCCCTGGCGCCTGAGGGACAAGAGCACCGTGTCACAGGCAAAACCGGGCAGAACTGCGGACCAGATGGAACCGGTGCAGAGTGGATCTACAGAGCAGCAGCCGCCGCCTGCGAACAGCAGCCATTCCAGCCCACAGGAAATAGCCCATCTTTGCTTTGTATTCGGTGGGATGGACACCGAGGGGGGGATTTACAATGACTGTACTGTGACAGTGCTTAATTAA

Function

GO: NA

KEGG:

id description
K20285 RABEPK; Rab9 effector protein with kelch motifs

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020011 True 912 mRNA 0.57 5 6342787 6344692

Neighbor

gene id symbol gene type direction distance location
AMCG00020013 NA coding downstream 9420 6329008 ~ 6333367 (-)
AMCG00020012 golga2 coding downstream 14157 6307533 ~ 6328630 (-)
AMCG00020005 NA coding downstream 142753 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 161126 6178256 ~ 6181661 (-)
AMCG00019997 NA coding downstream 555331 5769073 ~ 5787456 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 224363 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 524881 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 554192 6898884 ~ 6923473 (-)
AMCG00020026 NA coding upstream 641844 6986536 ~ 7008056 (-)
AMCG00020027 lhx2,lhx2b coding upstream 768121 7112813 ~ 7126623 (-)
G60311 NA non-coding downstream 66755 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 187563 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 228639 6111349 ~ 6114148 (-)
G60258 NA non-coding downstream 242876 6099445 ~ 6099911 (-)
G60252 NA non-coding downstream 262916 6079609 ~ 6079871 (-)
G60345 NA non-coding upstream 98583 6443275 ~ 6444733 (-)
G60356 NA non-coding upstream 142617 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 334486 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 453217 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1227905 7572597 ~ 7572831 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 170313 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1050114 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1064496 5276662 ~ 5278291 (-)
G60118 NA other downstream 1076862 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 1281275 5012444 ~ 5061512 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 105930 6450622 ~ 6461428 (-)
G60348 NA other upstream 118856 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 122579 6467271 ~ 6471434 (-)
G60516 NA other upstream 1096111 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2468093 8812785 ~ 8828109 (-)

Expression


Co-expression Network