AMCG00020012 (golga2)


Basic Information

Item Value
gene id AMCG00020012
gene name golga2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6307533 ~ 6328630 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020012
CGGAACTGCCGCGCTGATCCCTTATTGATGACGTGGTGGCGTTTACCTCCCGGACGATACAGGATGGCTGACGGGAGCAGGCAAAGCAAACTAGCTGCGGCCAAGAAAAAGATTCAGACCCTGCTGAAGGTGCTGGTGTCTGATCTTAATCTCTCCAATGGGATGGCTCTGCCTCCATTGGATAACAGCCAGGCTCTCAGTGATGGGGAAGTGGGCGGTCTCCCTAGTGGCCAGCTGCCTGAGGACTTGTGTGGGGAGCCGGCTCACCCTTCGACTGTGTCTAACGCAACCAACGCTAGTGTTACTAACCCTGAGTGTGTCAGCGACCCCGCCGGAACGCAGGACCCTGCTGTCGATGGAAGCTGCAATGAAAATTCACTGGAGGAAAACCGGCCCTTGTCGTCCACAGAAAGTCTGCGCCAGCTCTCCCAGCAGCTCAATGGCCTGCTTTCTCAGTCGTCAACATCCTACGTCAATGGGGACAGTGCAATAATGCCTGGCAATGAAAAAGAGCTGGAGACTCGAAACCAGGAGCTGGCAGCCGCCCTAGACTCCAGCAAcctaacaaacacacagctcagTGCAAAGCTAGACGAGTTGAAGAAACAGTCTCAGGATCTCACTGACCAGATGCAAAAGGAGCGCAAAGAATTCGAGCAGAAGTTTGTCAAAGAGCAGGGCGCCATGCGGGAGCAGCTGCAGGTTCATATCCAGACAATTGGCATCCTGGTCTCTGAGAAGTCTGAGCTGCAGACGGCACTATCCTACACACAGCAGGCTGCAAGACAGAAATCAGGCGAAGCAGAAGATTTAAGTAACCGCCTTCAGTCGACCAGACAGCGAGTAGCTGAACTGGAAAGGACTCTGTCATCGGTATCCACACAGCAGAAACAGTTTGAAAAGcATAACAAAGAACTGGAAAAGGAACGGGACAACCTGAAGCTTGAAGTTTACAGACTGAATAAAGCCAGCGAGGAGGCGAAGCAGCAGAGCTCGGAGCTGTCGGAGCAGCTGAAGCTCAGGGTGAGCGAGAACAGCGCCATGAAGCTGGACCTGGAGGACCTGCACAAGAAGCTGGAGATGGCTGACCTCATGATCCAGCAGTTCTCCAGTCAGTCTGGCCCACCTAATGCCAACCAGCAGTTCCAGATGGCCATGGAGGAGAAGCTACAGCTGGAGGCGCAGACTGCACAGCTCATGGAGTCCTTGCAGCAGCTGAAGACTGAGCGGGACCAGTATGCTGCCCAGCTGCAGGAGGAGGGTCTGGTGTGGAAGGACCGGACGGAGCAGCTGCTCTCCCAGGTTCGGGACAATGAACAGCTGAGCAGGCTCTGTCAGGAGCAGGAGGAGCGTCTGCTGGAGCTGGAGCGCACCGTCCAGCGCTTCTCCGAGGACACGGTGGACCGCCAGCAGATCCTGGAGGACATGCAGAGCGACAAGGCCACCATCAGCCGGGCCCTGGGCCAGAACCGCGAGCTCAAGGAGCAGCTGGCAGAGCTGCAGAACGGCTTCGTCAAGCTAACCAATGAAAACATGGAGCTGGCGAGTGCGATGCAGTCTGAGCAGCACGTGAAGAAGGAGCTGGCCAGGAAGATGGGGGAGCTGCAGGAGGACCTGCACCGGCTGAAGGAGGAGctGGCGGAGAAGGTGCAGGAGTCTCAGTCCCTGCTGGAGCAGAGGGATCAGTACTTGGCTCATCTTCAGCAGTACACCGCAGGCTACCAGCAGCTGGTGACCGAGAGGGAGGAGCTGCATAAGCAGTACCTGCATCAGACCCAGCTGATGGACCGGCTGCAGCACGAGGAGGTGCAGGGCAAGGTCCAGCTGGAGCTTAGCCacaaggagctggaggaggccagGGAGAAGCTGAACCTGTTAGCCAAAGACAATAATGACCTGAAATCTGAGGTCAGGGAATTGATTGCGAGTTCTGGACTCGGCACGCAGCCCAGGGATCAAGGCGATGGTGTGGAGAGCAGATCCTTACATGAAAGCATCCAGAAGACGTCCATCACGATCCCAGAGGACTTTGACAGCAGAGAAGAAATGGAGGCCTTTCTGCAGTCGGCGCTGTCCAAGGTAGAGAGGCAGAAGGACGAGATGAGCTGGCGCTATGAGGAGGAGAGACGGCAACACCAGGCCTCTCTCCAGCAGGTGGCAGCTTTGAGAAGTGAACACCAGCACCACAGCACGGCCGCTGCCGGGTCGAGTGGCGACGGTGTCCCAGTGGAGGTGCACGAGGCCCTGAGGGCGGCCATGGAGAAACTGCAGTCGCGGTTCACGGCGCTGATGCAGGAGAAGGCCGACCTGAAGGACCGAGTGGAGGAGCTGGAGCACCGCTGTATACAGCTGTCTGGAGAGACCGACACAATAGGCGAGTACATCGCCCTGTACCAGAATCAGAGAGCCATCATGAAGCAGAGGCACTTTGAGAAGGAGCAGTACATCAACATGCTGGCCAAAGACAAGGAGGAGATGAAGATGAAGCTAGCGGAGCTCCAGGACCTGGTCATGCGTCTGGTCGGGGAGAGGAACGAGTGGTACAGCAAGTACATCGGCTCCATCAACAACCCTGACCTGCTGGCGGGCAGCGTGGAGCCCAGCATTCCTGCAGAGAGGCGCATGGAGCTCAACGCCACTGACGGGCCAGAACCTCCGGAGCTGAGCGTGATGGAGGAGGCATCGGGGGGGGTGGTGCCCGAGGGATCGGCCCCTCAGGAGGGCAAGCAGAGGCCCCAGGAGGATGGCACGGCCCGCCAGATCatgcagctgctgcaggagatcCAGAACCCCCAGGCCCGGGCCGCTCCCTTCCTCGGAGAGAACCCCTGCATCCCCTTCTTCTACCGCGCAGACGACAACGATGAGGTCAAGATCCTGGTGGTCtgagcaccccccccccccccccccccccccccccccac

Function

symbol description
golga2 Acts upstream of or within brain development; skeletal muscle tissue development; and thigmotaxis. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. Is expressed in otic vesicle. Orthologous to several human genes including GOLGA2 (golgin A2).

NR:

description
PREDICTED: golgin subfamily A member 2 isoform X6

GO: NA

KEGG:

id description
K20358 GOLGA2; golgin subfamily A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020012 True 2924 mRNA 0.58 26 6307533 6328630

Neighbor

gene id symbol gene type direction distance location
AMCG00020005 NA coding downstream 107499 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 125872 6178256 ~ 6181661 (-)
AMCG00019997 NA coding downstream 520077 5769073 ~ 5787456 (-)
AMCG00019995 NA coding downstream 597670 5688531 ~ 5709863 (-)
AMCG00019996 NA coding downstream 692077 5604443 ~ 5615456 (-)
AMCG00020013 NA coding upstream 378 6329008 ~ 6333367 (-)
AMCG00020011 NA coding upstream 14157 6342787 ~ 6344692 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 240425 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 540943 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 570254 6898884 ~ 6923473 (-)
G60311 NA non-coding downstream 31501 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 152309 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 193385 6111349 ~ 6114148 (-)
G60258 NA non-coding downstream 207622 6099445 ~ 6099911 (-)
G60252 NA non-coding downstream 227662 6079609 ~ 6079871 (-)
G60345 NA non-coding upstream 114645 6443275 ~ 6444733 (-)
G60356 NA non-coding upstream 158679 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 350548 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 469279 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1243967 7572597 ~ 7572831 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 135059 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1014860 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1029242 5276662 ~ 5278291 (-)
G60118 NA other downstream 1041608 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 1246021 5012444 ~ 5061512 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 121992 6450622 ~ 6461428 (-)
G60348 NA other upstream 134918 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 138641 6467271 ~ 6471434 (-)
G60516 NA other upstream 1112173 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2484155 8812785 ~ 8828109 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G176410 NA non-coding NC_053128.1 CM020925.1 20237527 ~ 20241216 (+)