AMCG00020013


Basic Information

Item Value
gene id AMCG00020013
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6329008 ~ 6333367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020013
aTGTCCGTGTGTCCTGACCCCGCATCGGTTCCTCTGCTGGCCAAGGGAGAGATGCTGGCAGCCTTCCCTCTCTGTCCAGTGACCGAGGAGGACCTGTCTCAGAACCCCCACTTCTGCAGGCTGCTGTCCGCGCTCTCACAGCACATAGACGACACCGGACTGACCGTCGCGCTGAAGAATGAGCTGGAGAAGGCAGAGCGGGAGCTGCAGTTACAGAAGCTGGGCTGGCTGAGGTCTGAGAGTCTGTACCGACTATTGCAGGAGATGATCCAGGAGCACCACGTCACGAAACATCACTCCCAGCCCCTGCAAGAGGACAGCGAGtTCTATGAGACTCTGGAGCAGTGTCTGCTGGTGGCCCAGTGTGCGAGGATGCTGGATCCCAGTCCAACCACAACGCAGGTCCAAGCACAGCTAATGGGACTCACCCCAAAGCATGTACTGGATCTCATGCCACCAGAGCTGGACGTGAAGCGAATGAAGCAGCGGCTGGTGCGAAAGCTGGAAGAGAAGCTACAGAAGAAGTGCTTCACTCTTCTCACTTACTACCAGCCAGACTGGGAGATGCTGGAGAATGAGCGCAAGAGGCtggagagccagagagagagaggcagggagcgCGCGGTGATGCTGCAGCGCCAGGCTCACGGCTACCTGACTGAACTGCTGGGTTGCATGCAGATCCTGCAGTCGCTCATCCTGGATCACCGGCTGAAAGCTCAGAACGAGTTGGACCGCAAGAAGACGGAGTACATGGAGGCCAAGTGTCAGATCATCATCCCGAAGATTAGATTGGAGATGTTGCAGGTCCAGCTGGATACCTATACACCTCAGAAAATAGCTGTGCACCGTAAAATCAGGGACGCTCTGAAATCGGAACTGCAGCGAGAGGAAGCGGAGAAACAGTCCGCTGAGAGAATGCTGTCCTCCTTTGAGATCCTGGGGCAGGACTTTGAAGTGCTGGTGAAGGAGTACGCCCAGCTGCGCCAGGAGATCGACAATAAGAAGTGGGCTTTGCACGAGTTCTCCCAGCACAACCACTGAGCCGGGCGCCACACCCATCCTCCCCCACCATGGCCCAGTCCTCTGCACTAGGTGCTGAACGGGAACAGCGAATCCAGTTCTACACCTCTGGGGGTCTCTCTTCAAATGCACTAAAACATGAATGAAGTACTACACAGATTGTCATAATTCTGCTGCCTTGTTGAGCAAAAGGACACGCTGGAGAATTCTGGTTTGGATTGACAGGCAAAGAGAGAATTATCTTGTCCTCTTGTTTATTGGCAAAGCCCCATTCTTTCATTCTAGAAGTcagaattcaatttaaaaatggaaaacggGACAAATAATGAACATGACATTTGACCCAGTTTCCTCTTCCTAAGACTGTAAGAGTGTTATTCCTTTGGGACAAGACTACTGAATTATAATTCCACAGTTTTCCTCgtaatatttgaaatgaaatcatAATTTTGAAGATTGTGTGGTAATCGGTGAGAGAGAAGCTGTTACTccatgttaattttaaaatatttgatataagatattttttttttttacgacaATAAAACTTAGAACTTGTGTATctacatgtatttttgtgtttgttttatgtgctCTGATCTCCACATTTGgtaacagttatttatttttttacttttatattttactctggaataatacaatattgcaTCTAGTCCATCATCAGACAAAAACGTTTTTATACTTTTACAAAGTTTTCATTGTCATTAAGGAACGACGAGAGAGGAAGCCAAATGACTAGTCTATTAACCTTATGTCAGTTTTGAGGTGATCTATAATCTAATAACATAGATGTTTATTTGGTAGGAAAATATAGTTGTGTGTTCActaaaactacaaaacaaaccactATTTAATCAGTTTATTAAAACTAATGTATATTCTAAAACAATATCTTGAAATAAAGCAAACTA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process

KEGG:

id description
K16587 HAUS4; HAUS augmin-like complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020013 True 1955 mRNA 0.46 9 6329008 6333367

Neighbor

gene id symbol gene type direction distance location
AMCG00020012 golga2 coding downstream 378 6307533 ~ 6328630 (-)
AMCG00020005 NA coding downstream 128974 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 147347 6178256 ~ 6181661 (-)
AMCG00019997 NA coding downstream 541552 5769073 ~ 5787456 (-)
AMCG00019995 NA coding downstream 619145 5688531 ~ 5709863 (-)
AMCG00020011 NA coding upstream 9420 6342787 ~ 6344692 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 235688 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 536206 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 565517 6898884 ~ 6923473 (-)
AMCG00020026 NA coding upstream 653169 6986536 ~ 7008056 (-)
G60311 NA non-coding downstream 52976 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 173784 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 214860 6111349 ~ 6114148 (-)
G60258 NA non-coding downstream 229097 6099445 ~ 6099911 (-)
G60252 NA non-coding downstream 249137 6079609 ~ 6079871 (-)
G60345 NA non-coding upstream 109908 6443275 ~ 6444733 (-)
G60356 NA non-coding upstream 153942 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 345811 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 464542 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1239230 7572597 ~ 7572831 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 156534 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1036335 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1050717 5276662 ~ 5278291 (-)
G60118 NA other downstream 1063083 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 1267496 5012444 ~ 5061512 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 117255 6450622 ~ 6461428 (-)
G60348 NA other upstream 130181 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 133904 6467271 ~ 6471434 (-)
G60516 NA other upstream 1107436 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2479418 8812785 ~ 8828109 (-)

Expression


Co-expression Network