AMCG00020019


Basic Information

Item Value
gene id AMCG00020019
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6467271 ~ 6471434 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020019
GTCAATTCGTGCGTGTTTTCCCCGGACTGCCAAGTCCTGCTGACCTGCTCTGACGACTGCAGGCTCTTCCTGTGGGACGCCCGGACTGGCCAGCTTTTGGCTAAAGTCAGCGGACACACagGGCCAGTGAAGTCATGCGTCTTCTCCCAAGACTGCTCTCTGTTCGCCAGCGCCTCTCATGACTGCACAGTGAGGATTTGGCACACGGTTACTACCAACCCCATGCACGTACTGACAGGTCACAGCAAGAGTGTAGAGACTGTTTGCTTCAGCCCAGATGCCAAGTGGCTTGTGTCAGGCGGCTGGGACAAAACCGCGATCCTGTGGGATGTCCAGGCCACAGGTTCATGGGACTACACAGTGAAAGTGTGGAGTGTACAAACTGAGGAGTGTGAGAAGACTCTGAAAGGACACTCGGGCAatgtcagctgtgtgtgtttctctgtgtcagggATGCTGGCATCAGGGTCATGGGACAGGACGGTGCGGGTCTGGCACCCCAGACGAGGGACGCTGATCTTCCTGCTGGAGGGTCACATGGGATGGGTGAAGAGCCTGGCCTTCTCTAGAGATGGGATCATCCTGGCATCTGCGGGGGAGTATGACACGgACGAGTCTGCTGTGGCTCATGGATGCACATTCACTCCCAGCGGGGCCCTCTTGACCACGGGATCTGCGGACTTCCTTCTAACAGCAGACAACAGTCCTGAGGAACAGGAAGGAGACCACACTGAACCGCTTCAACCAGATACCACTGCTGAAAAGAAA
>TU75494
GTTAAGGACAGGTAGCAGCATAGCACCTGCACGAATTCACACACaggtcgcgttcgtgtagcgcagatgtccgcagttctgcgcagatttgcagCATctcaccgatcccattggtggagctgcgcagagctgcgcacatctgcgctacacgagtCCGAATCTAGTCTCAGGCGCTCCGCAGAACCACGCCTCCCTTTCTACAGCCTCTTATTAATGGTGCTGCTTATTCAGGGCAGAGCCATTAAGAAGCATTCCCTTTATCAgcacaaataaaacagcacCCAGCAGCTAAActaataaaatgtgcaaatactGAAGCCCAGATAGACCAGCTGCTCCTCCCCCGGCGAGGCAGCGCTGTAACTCGGAGACCGGCCGTGTGTCTGCGCAGTAAACAGTGTCCGGGACTGCGGTCAGTGTCCGGCCACAATCACAGCTTTACATCCATCCACTGCGGTCCAAGTCTGAGTAGCAGCGCAACTGCAAAGAGAACAACTTAATGCGGGAACATGTGGAGAGAGTATTTTACCAAAATAGGGGTTAAGTACTTCTCAAGACACAAAGGCGAGGTCAATTCGTGCGTGTTTTCCCCGGACTGCCAAGTCCTGCTGACCTGCTCTGACGACTGCAGGCTCTTCCTGTGGGACGCCCGGACTGGCCAGCTTTTGGCTAAAGTCAGCGGACACACagGGCCAGTGAAGTCATGCGTCTTCTCCCAAGACTGCTCTCTGTTCGCCAGCGCCTCTCATGACTGCACAGTGAGGATTTGGCACACGGTTACTACCAACCCCATGCACGTACTGACAGGTCACAGCAAGAGTGTAGAGACTGTTTGCTTCAGCCCAGATGCCAAGTGGCTTGTGTCAGGCGGCTGGGACAAAACCGCGATCCTGTGGGATGTCCAGAATGGAGAAATCGTCAGAATATTCTCAGGACATCAAGGGGCCATTCAAAGCAGCATGTTCTCCTTGACTTCTCAATATCtgGCCACAGGTTCATGGGACTACACAGTGAAAGTGTGGAGTGTACAAACTGAGGAGTGTGAGAAGACTCTGAAAGGACACTCGGGCAatgtcagctgtgtgtgtttctctgtgtcagggATGCTGGCATCAGGGTCATGGGACAGGACGGTGCGGGTCTGGCACCCCAGACGAGGGACGCTGATCTTCCTGCTGGAGGGTCACATGGGATGGGTGAAGAGCCTGGCCTTCTCTAGAGATGGGATCATCCTGGCATCTGCGGGGGAGTATGACACGGTACAGACACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020019 False 768 mRNA 0.56 6 6467271 6470466
TU75494 True 1272 TUCP 0.54 7 6468288 6471434

Neighbor

gene id symbol gene type direction distance location
AMCG00020011 NA coding downstream 122579 6342787 ~ 6344692 (-)
AMCG00020013 NA coding downstream 133904 6329008 ~ 6333367 (-)
AMCG00020012 golga2 coding downstream 138641 6307533 ~ 6328630 (-)
AMCG00020005 NA coding downstream 267237 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 285610 6178256 ~ 6181661 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 97621 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 398139 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 427450 6898884 ~ 6923473 (-)
AMCG00020026 NA coding upstream 515102 6986536 ~ 7008056 (-)
AMCG00020027 lhx2,lhx2b coding upstream 641379 7112813 ~ 7126623 (-)
G60345 NA non-coding downstream 22538 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 108332 6300656 ~ 6358939 (-)
G60311 NA non-coding downstream 191239 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 312047 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 353123 6111349 ~ 6114148 (-)
G60356 NA non-coding upstream 15875 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 207744 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 326475 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1101163 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 1381567 7853001 ~ 7854373 (-)
G60348 NA other downstream 685 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 5843 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 294797 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1174598 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1188980 5276662 ~ 5278291 (-)
G60516 NA other upstream 969369 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2341351 8812785 ~ 8828109 (-)
G60746 NA other upstream 2367777 8839211 ~ 8839945 (-)
G61170 NA other upstream 4284034 10755468 ~ 10756419 (-)
G61269 NA other upstream 5224257 11695691 ~ 11701645 (-)

Expression


Co-expression Network