AMCG00020033


Basic Information

Item Value
gene id AMCG00020033
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7445481 ~ 7453075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020033
CGTGCTCATTTATCAGAAACCACATGGTGTCATTAACAGGCAAATAAGCACTATCTTGCTGATTTCGTTTTTATGTTTATAGCCTTCCTTTTCCTGGTAATAGTTAACATGCAATTGAATTGGGGAATGATGCTGCCTCTAGGTCATATCATGAAAACAGTCTGGCACATGGGCTAGAGGCAGCCCATGatcagaaatgaaaacattgAGGCTGCTTTGGATTGGACTGGGGATAGCCACCACGCTTGCAATATTGTTTTGCTACAGTCATGTGACAAAACATATGTGGACACCTGTGCCCAACAACGGTCTGCATGGGTACATTCGAATCTCCACAGGGCAGTACCTGGATATCCACTGTAAGCAATGTGCCTTAGTATCCAGTTCCGGTCAAATGCTGAAGGCAAGGAAGGGGAATGAGATTGACCAGGCGGACTGTGTGATCCGCATGAACAACGCCCCTACCGTGAACTATGAGAGTGACGTGGGCAGCAAGACCACGGTTCGAATGGTCTCACACACTAGCGTGCCACTGTTGATCAAGAACGATACCTATTTCTTCAGGCAGTCAGCAGACACTGTCTACATTATCTGGGGCCCCGAGAGAAACATGAGACAGGATGGCAAGGGAAGAATCTTCAACGCCCTCTGGAAAATTGCTAGGAAGTACCCTCGTGCCAAGCTTTACACGATGACCAGGGAGAGGATTCTGTATTGTGACAACATCTTTCAGAACGAAACCGGAAGAAACAGGATGAAATCTGGGGCCTATCTGAGCACTGGGTTTTTCACCATGGTCCTGGCTATGGACATATGTGACAATATTCTAGTCTATGGGATGATCGACGATAGCTACTGCAGCCAAGCTAACTACTCGACCGTGCCTTACCATTACTACGAGAAGGGCAGGATGGACGAGTGCCGGATGTACAGAGCCCATGAGAGAGCCCCCAGGGGTGGCCACCGCTTCATTACAGAGAAGGCCATCTTTGCCAGATGGGCCGCCCGCAAACACATGACCTTCTCGCACCCTTCCTGGACAGATAAGAAAAGTGTTTCTTGAGGATTTGCTCTTGAAAGGCATTGCCTAAGGATCAGCAGCAGCATTCTGTTGCTTTCAGTGCCCATAAAACTGCGGCCATCTAACATACATTTCATGTATAACGAGCAAACCTCATGTGATGagagtttgtatgctttcaagCATCAATAATGCAATTTCATTTTTGCAGGATTTAATTCTGCAAGAGTTGGATTGACGTCTGTGCAATACATTTCTCTTCTATATGATCTTGTCTTTTAAAAGCCAGATTGCGGAAGATTAAAGGCAGTATTATATAACTGATGAGACATATGTTACGTATTGGGATTACATATGAATGACTGAAATTCTTGATGCGGTTTCCCAAACGAAATCAGTATTAAATTGTGCCAATGGAGTTTTACATGCCAaatctgtatttcagttttaaatcaaTGATCAATGATAGCATTATACTAGTGTTGTAATCtataatatgaatttaaaatatttaggtCGTTTACAGGTTTTATGTCTATAACCCCTTTTACAACCAAGGTGTGTACATTCGATCCCTGGGGGTCCAAGATTTTTTAGTTCAGCTCttgattttaaacaatgttttatataggTCTATCCCTTTTAGCAGCTGACGACAGACCATAAAGTACCTGAAATACCTGCATTGTTCCAGACCTCAAAAAACACACTGGAACATTAGTGTTAGGATATTACTATTACTAGTCTAGCCTTCCTGTCTTGTAAGTTAGCATTGTTGACCAGTTTCCCTCAGCATTTTCACTAACCAATCATTTCCCTTTTACTTGCTCATTACTGTTTCTAGACACCTGACAGGCATTATGTATATTATAGTTATGTGTCATATATGTAAGGGCCTATGGTGGATCAAAGAAGGTAGGCTAAAGAAAATATAAGGAAATGGTTAATGGCTTATTAATACCAATATAACAATAAGAGATAGATGCATTTCATAATACTACTGAGCTACAGTAGATGTTGTTTTATTGATAGCATGATCAATTCAGCGAATACTGAAGATAAACGAGTGCAATGTATGGGTAGTTACCTCGTTATGATGGAGACATAACCATTTTCACTTTGGCCAAATGACACAATTACAgttaactgtttaaaaaaaaaaaacatctgacagccagttatatatatattaattgttatATGACCTGAAAGTTATTGCTATACAGTACCTAGGTTACAAACAAGGAAATCCTTTGTTATTGCTGTAAAAGCATTTTTGATATTGTAAGTGTTACAGGTGTATTACTTTgatgaattaatgtataaatataaaagaatattaaataaaaatgtcttgaaacaacaacattaacaatcaTAACAAAAttctcaatattaaaatattaattcagaGTCGTATGCAtcttagaatatattttaattaatcaggcAATATCTTAAATGACCAGCAGAGGGTAAATGAAAACCCAGCAACTTTTGTGCAACACAGGCCATTAACATAGATACAGCTGAGCAGATCTGTTAACTACTCAATCTGTGTGGATTTAGCTCAGACATACTTATGGTCCTTTTTCAATTGAAAGGAATATAGTTTGACAAACTAGTAACAAATGAGAGAGgaaaattatcaaaatattcCTCACACATCAAGAAAATCCTCACACTGATTTGGGCAAGTTTATAGTTcagtaattataattaaagtgtaatctgtatatttttagtTTGGAAGTAGACAAAACAAATTTGGTAGAGTGAGTCTAGTAGTAAGTGTAGAGGCTGAATTTCTAAATGTCCAATCCTGACCTTATTTGATGGCTTTAACACAGTAGTAACTCTGATGGCTATAACTTTTAGAAGTTGCCCTTTTTCTCCTATGGTGAGGAACTTGAATAAGTTTATCAGGACAGGCCAAAATTATTCATGATAATCAGATCtgcttttaattgcatgttGCATCTGTGAAAGTGCGATAGAAAGATAAATACTATATAGATAGTGTGACACAGTGTGGGGTATCAAGCACTGACGTCCGGGGATCGGGGTTATAGATCACGGCAACGTTATGCGTGGGTCAAAAAGGGGGTAATTGGTGTCGTCAGCCAATCCAGATTGGGTTTCCAAAAATGGGTCTCAATCATGCGAAGGTAAGAATCTAGGTTATCAAATCATTGCCACactactctctctcacacacaaaaatgctCCAAACGCCCTCCTGGCTTTTCCCCTCAGGTACTCTGTGCCGTCTATAGAGCTGTGGGGTTGTTTTATAGGCTGCCGGTGATTGCCAGCAGCTGGCTGCTTCTTCTGCCCCGCAGGCTGTCAATGGTGCGTGTAGCtcctctgcctgtgtgtgttctTGCCCCGCAGGCTGCCAGCATGTGGTTCCGAGACAACCACGGGAGGGTGGCACGATCACTTATTAGTATGAAATGTCACCCAAGTAAATAGTATCTGAGCGAGTCCAGTGCCCATTTGATGGCCAAGCACTCTGTCTCTATTGTGGAGTATTTGGTTTCCCTGGGCAGAAGCTTGCGACTAAGATACACAATGGGGTGTTCCTCTCGCTGTATTTCCTGTGAGAGTACGGTTCCTAGTCCCTTTCTGGACGCGTTCGTCTGTACAAGCGGGGATCTTCGGAAGTCGTGGGTCACCAATCCCAGCCGATGGCAGAGGGCTTCTTTTAGGGCACGGAAGGCGGCTTCAGCTTGCTCTGTCCAGATCACCTTGGACGCTGCTTATTCTTGATCATCTCGGTGGCATGTTGGCATTGAAGCAGCGATAATAGCTTGTCAATCCCAGAAATGCTCTAACTTGTTTCTTGTTGATGGGTCAAGGCCAGGCATGAATTTTTCTTGTGGCTTGATCAGGCCTCTGCTTATGGTGAGGCCGAGTTATCTCCCACTTTTTCCAGGACCTGGCAGGGACCTCTCCAACTGGCCAGGAATCTGTTTTTCATAGTGGACACAAGAAACAGTACCTGATCGCCTGGCTGAAGTACCCGGGGCTGGGCACTGCGGTTGTAGGAGCgctgttgttcttgttgctCTTGCTGCATATGTGCCTGGACCATTGGCATCTCGTGTGCGTGCTCAATTAGGGTTCGGTGTGGGCATGGCTGTCCTTCCCAAGTTTCTTTAGCTATATCCAGTAGCCCCGCAGTCTTCGGCCATATAGCAACTCGAATGGGGAGAAACCAGTGGAGGCTTGGGGTACCTCTCGGATAGTGAAGAGTAAATAGGGCAGTAGCTGGTCCCAGTTTTTCCCATTGAGTTCCACAGTTTTCTTTAGCATGGCTTTCAGGGTATGATTAAATTTTTTTACGAGTTCATCAGTTTGTGGTTGATTGATGGAAGTGcacacttaatttatttatttatacatggaaTTTAAAGCGCCTTTGAAGAAACCCAAggacactgtaaataaaacaaggctGTGGGGTTGTTTTATAGGCTGCTGGTGATTGCCAGCAACTGGTCTAATATACTTCCCATCATGCACCACATCCCAGAAAGTGTCATAATAGttactattttatgtttttttcttttttcaagctCTGATCTGTGGAATCTGAATTGGCTCTCTAGAGACCACACAGTGATCTGAACCAGAAATGTGCTGTGAAAGCCAAAACATATTATAGGAATATGTTATTTTCTGGTTTGTCTTagacttaaaatataaataataaattgtatggGCATCATATGACAAGAATTAGAATTTATTTAACCActgtaacacaaaaataaaaggtcCTGCCACAGGGATTTGCAAGACCACTGAGCAATGGTCTTCTCATGATCCAGGAATTTGGatctgggtgggggggggggataatttTGATAACTTGGACAAATTTAGGATTGTaacaatacaattgtattttttttttttttttttaaacattaaagcaCTTAAATTATGCCAGTTGACATATGACATCACTGCACATCATCTCAGGCTGCTGAGATCTGAGCAACTGCATGCCGTACAGGATACATGGCGAGTAGTTTTTAGCGTTACTTTGGATGTCTGAGTCAGGCTTATTGGtgacttaaaataataatgcccTCAAAAgataattttacatattttcatacCCACGTGAAGACTTAATTCCCACTTAATACACTCAAACATAAGtgatatatacagctctggaaaaatgtgagaccactccaagttcagaaatcaatgttaagtggtctcttaattttttccagagctgtatatatatagttttatcaGAAAAGAATCACCTTTATGCCTTAACATACATGCATggcctttttcttcttctttcttttttattattttatgtacataGCATATTGAAACATTGTTGTACAATCCTCTGCACTGTGACGGTCAGTGCTACAAATCCTcagacattacaaaatatagtaAATGTA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047290 (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020033 True 5466 mRNA 0.41 6 7445481 7453075

Neighbor

gene id symbol gene type direction distance location
AMCG00020034 NA coding downstream 987 7429012 ~ 7444494 (-)
AMCG00020035 NA coding downstream 59719 7364054 ~ 7385762 (-)
AMCG00020027 lhx2,lhx2b coding downstream 318858 7112813 ~ 7126623 (-)
AMCG00020026 NA coding downstream 437425 6986536 ~ 7008056 (-)
AMCG00020025 NA coding downstream 522008 6898884 ~ 6923473 (-)
AMCG00020039 ntng2a,LOC103151468,LOC107664998,LOC104943762 coding upstream 54286 7507361 ~ 7515691 (-)
AMCG00020038 NA coding upstream 84857 7537932 ~ 7569605 (-)
AMCG00020043 nup188,LOC102792001 coding upstream 313850 7766925 ~ 7785992 (-)
AMCG00020051 NA coding upstream 339223 7792298 ~ 7797939 (-)
AMCG00020050 lrrc8a,LOC104923672 coding upstream 346847 7799922 ~ 7810406 (-)
G60387 NA non-coding downstream 644731 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 749705 6679178 ~ 6695776 (-)
G60356 NA non-coding downstream 956104 6487309 ~ 6489377 (-)
G60345 NA non-coding downstream 1000748 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 1086542 6300656 ~ 6358939 (-)
G60540 NA non-coding upstream 119522 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 399926 7853001 ~ 7854373 (-)
G60656 NA non-coding upstream 591534 8044609 ~ 8047241 (-)
G60723 NA non-coding upstream 1340893 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 1345889 8798964 ~ 8799167 (-)
AMCG00020019 NA other downstream 974047 6467271 ~ 6471434 (-)
G60348 NA other downstream 978895 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 984053 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1273007 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 2152808 5291590 ~ 5292673 (-)
AMCG00020066 fam69b,fa69b other upstream 1359710 8812785 ~ 8828109 (-)
G60746 NA other upstream 1386136 8839211 ~ 8839945 (-)
G61170 NA other upstream 3302393 10755468 ~ 10756419 (-)
G61269 NA other upstream 4242616 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 4548625 12001700 ~ 12052211 (-)

Expression


Co-expression Network