AMCG00020034


Basic Information

Item Value
gene id AMCG00020034
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7429012 ~ 7444494 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020034
cTGGTAAAGACTCGCAGCTCTAATTGCTGCCAAGGGTGATTCTACTAAGTATGGACTCAAAGGGGTGAATATTTCTCTAACAAGACATCTCAAAGCATGACCAATTTAATTTGTGGGTAGCAAATCTAATGTATTTATAGtacatattattgttattactcaATATTATTTAGTAGCATAAACTATTACACCTGGGgaatatttcatttgaaaggaGATGGCATTTATCCAGACGCCCAGTGCTTAAAGATGGAATGGCATTTTGCCTTTCTTAGATTTGGAGAAAGGAAGGTAAAACTGCGGCTTTTTAGACACATAGCAGCAATCAAACATCCGATCCTGTGTTGACAGCACTTGATAAAGGACGGCGTTGTGGccacagtatttatttgaatgtgagaTGGTCAGATTTCTACTGCATTGAGTTCTTGTCGGCTCGCTTTAGGACTGCGCGGACACGCAGGTCCCTTATTACAGGGGCGATGTGGAGAGAATCGATATCGCATCTCTGCGCTCCCTGAAATGCATGAATGGATCAGAACCAGCCAGAGCTACAAACTGGATGAAGACTGAACTGGGGAGAATGTGATTGTAGTTCTAGCCCTACAGGAAGTATGGCGCACAGGCTCGTGGATAAGTTGTCTGGTTTTGACTCCCCACAGCAGCGGCAGCAGAGTCAGAAGATGGTCATTTTTGGGACCATTTTCCTCCTCACCACGCTGCTCATCCTCTACAGCTCGAACAGTGGAAATGAAAGTTACAATCCCCGCAATGGCTACCGCTACACTGTGCACACCACCAACTTGAAGGCATGGGCAAACCAGGATGGCTATGTTGCAGTCTATGGCAACAAGACCATGAACCTGCACTGTAAGCAGTGCGCCTTGGTGACCAGCTCCAGCCACATCCTGGGCAGCAACGTGGGTGACGACATCGACCAGGCGGAGTGCGTGATTCGCATGAACGATGCTCCCACCACGGGCTTCGAGAAGGACGTGGGCAACCGCAGCACCATCCGGGTGGTGGCCCACTCCAGCGTGTACCGCATCATCCGGCGGCCCAGCGAGTTCCTCAACAAGACCCCCGACCCCGTGCTCATCTTCTGGGGGCCGCCCACCAAGATCAGCAAGGATGCCAAGGGCACGCTGTTCCGGCTCATTCAGAAGGTCAGCATGGCATTCACCAACCTCTCCACCTTCATCATCGCGCCCAAGAAGATGCGCCAGTTCGATGACCTCTTCCACAAAGAGACGGGTCGGGACAGGGAAAAGTCTCGGTCCTGGTTAAGTACTGGCTGGTTTACCATGGTGATCGCCATCGAGATGTGTGACAGTATTCACGTCTATGGGATGGTGCCCCCATACTACTGCAGCCGGAGACCTCAGCCAAAAAGGATACCCTACCACTACTACGAGCCCCGGGGACCCGATGAATGTACAACCTATATCCAGAacgagagagggaggagaggtaACCACCACCGCTTCATCACAGAGAAGCAGGTGTTTGCACGCTGGGCCAAGCATTACAACATCACCTTCTCCAACCCAAAGTGGTGACGACAAGCACAGACCGTGGACTGCGGGGGAGATGAGAGCCAGCGATAGGGGGACTGTCATCTCCCTCTGATCTGTACAGCACCATCCAAGGTTTCACTTGACCTTCTGCTTAGGTCTGCTTCAAACTTACAAGTGTTTTTTGTACACATGCTCAGTGCTCTTCTCTCTGTAGGTATCGTGGATGGGTAGTAGCCTACGCTGTGACCGTTAGTTGAGAATTCTTTCCTTCAGAATGTTGCAAGTTGGGGTGGAATCTCAGTGAATATGAAAAGCATCTTTattttcaagtaaaaaaaaaacatatatatataaatatataaatgtctaCTTTCTGCAAGTTTTTGGCCATTTTTCTGATGGAGGAATCATTTTCTACACAAACCTACTATGAACATCTGTCAGCCGTTAATGTAAATAAGAGTTACTGAGGATTGTTGCTTTcttaaaagatgtatttttagATGTTTATAATTCTTTGTAGAAACTACCACAGgaaatatacattattctaccaacacatacatacatttatgtagAGAATACACAGGAATTGAAATCTAAGAGAATACTTTTCTATTTTCctacaaattatataaactaAAATGTGCAGGACAATAGAGTTCATTTTCACTCTCCGAGAGGATTGCACCAGTTTTTCTCTGGACTAACACTTTCCAAAAGGCTTATTTCTCTGTAGGAGAAAGGCTGAAAAACAAGCTGAAGAACATGTTTTGAGTTCTACCACCCAGCTGCTTCtgatggaaaatggaaaataatttaacagcTAACTAAGTACAAGGGAATGGGCACATACATACGAAAATTCTAAAACCAAAGAGAAGCCCATTTAAAGGCCACTGGAACGACAGACTGTTCTTGTTCTTTCCCAGGCTCCAGGGGAAGGCCATTCGAATACCTTCTCTTCAGCATGTGTGGGGGTGGGATAACAGCAACATTAATTTTCCATGGTAACCCAGTCTTCTGAATCCATGGTGATTTAAACTTCAAACTAAACTCTTGGCACTATCAGTTTAAGAAATTCTTAGAACATGATTCGGAGAGAAGCACAAATCTGGTTCTTTCAGTTTATTCAGAAAGCAGCACTCACAAGCAACAGCTGGGTAGGGCAGGCATCTAGAGGTGTGCCCAGTCTCTTACATATAGTcaattttgattaaatacaatggGGAGAATAGATATGTTTTCAGCTTTCCATTCCATCAATGGCTTAATTAATCAGGATAACCATGATCTTTAACCACTGATTGAGTTATACACACTGAAgctacacacacaagcacacatttaAGTTATGCTATGCAATTGGCACCTGAATATGAAGAGGGGGAGTGATTTGATTATCAtacctgtgttttgtttttttgtgtttgtattctttaaaatgcatttttgtgttgttttaaattacactcaTTTGGTTTTGATAGCTTAGAACATTTGTGTTTCGATGAACGTGAATACAGaaccttaaaatatattgcattagaCTAGATATGACTTTAGTGGTtcttattttttgggggttgtttTTCTTACTAAAAAGACAGTGTCTCCAGTATTCACCTCAGACCAACtgactgtttatttgtttaagtgCAGGTGATAATGCGAGATAAAATAATCCAGTCACGAACACCCCTTAAACAAACGAAGACTGTTAATTTGCCTACAGAGGATGTAGCAACTTCACACTGCCAGACCAGTATCTCCTTCTCATAGAAGAAAATGGGGAAAAACTTTAATCAGTTGCTACAAGGGTGTGGAGACCGAAGTAGACGGAGAaatgctaaacaaaacaaacctgacTTCCCTTGTTTGAATGCTGGGTATTGTGTTTGTTCTAGAACTTGCATTCCAAAATAAAAGAACACTGCTGCCCACTAACGGAAGTACAAATCCCCTGTTTgtgtagtcttttttttttttaatgaaggatCTCATCTGAAATGAatccgaaaaaaaaaaacagtatgtgCAGTCCTCTACCATCTGTGTTGATGATTGGTAACTCAAAGCAACACAGACTTCTCTACGAATTTCCCTGCGCAACACAATAACGTAAGTATTTTTTAGCAGGTTTTTAGGCCACAAACCCATGCACTTGAGAAGGGTTGCGGTCAAGACCGGGTATTTCGCAGAGCATTCCTGGCCCTGTAAGGTCAccctaaaatattatttatacaagCATGATATGACTACAAAGCTGTACTATGTGACCCCATCAGTAAGGTGGAATGTCATTTTTGCCTCCAGATTTTATATTCCAgtgtattacatatatttaaaatagcttgctgttattttgaattgatgtttgacaagtttgtgtgtgtaaaaacatTTGAGCATTTTATGGAATACactcaatgtaaaataaagatgcTTTTTCAGTATCTGTCTGCACAGAGGAGCTGGATGTTTTAGGATCTGCCATCAGTGTTGGGATTtttcttgaaaacaaattaacaatagaATGTTTTGTAATCTTAACATTTTTTGTACCTATGGTATTTGTGATGCCATTTCTTTTCACTCTTTTTGAATGTCTTATACTGATCTTTGATGATGGAAAGAATACCCAAGGCTGTGTAAGATATTTGTTCACAATGTGTGTAGgcctaaatgtttttaaagtcttGTAGATTCAATCGATTTTGTCTACCACCCATTTCCTCTATGGTTACAATAAAGACGCACACTTGTTTGAAGGCGCTTTCTTTTTTGGAATCTCTTTCAATCGTTTGAATACATATGATATTTGGATTCTACACAAAGTACTGATGTTTGTAActttttaaacagaacaatCATGCTTGTGTTACTGCTGTGCTGGCTAAGGGAGCAACGCCATTGAATTGATGCTTCACTTTGATTAATTAATGACTGATGTGTccaagaaaagacaaaaacctGAATTATTCCTAAAACACCTGCAACTACATACAAGAATACAGCAGGATCCAAgatattccttatttatttttgtaaggttgggggaaaaaaaaaatcacacaagaTGTTTCATGTGGGATTGTTAAAGGAATCCTATGGGATATTTGAGGAATGTTTCAGGGTTTTGTCTCaatttgttttcccatttttgTGTGGTTGAACACTTTCTGATTAAGTGTGTTTAGAATATATGAAGC

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03376 SIAT7F, ST6GalNAc VI; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7F)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020034 True 4729 mRNA 0.41 6 7429012 7444494

Neighbor

gene id symbol gene type direction distance location
AMCG00020035 NA coding downstream 43250 7364054 ~ 7385762 (-)
AMCG00020027 lhx2,lhx2b coding downstream 302389 7112813 ~ 7126623 (-)
AMCG00020026 NA coding downstream 420956 6986536 ~ 7008056 (-)
AMCG00020025 NA coding downstream 505539 6898884 ~ 6923473 (-)
AMCG00020024 NA coding downstream 532023 6869573 ~ 6896989 (-)
AMCG00020033 NA coding upstream 987 7445481 ~ 7453075 (-)
AMCG00020039 ntng2a,LOC103151468,LOC107664998,LOC104943762 coding upstream 62867 7507361 ~ 7515691 (-)
AMCG00020038 NA coding upstream 93438 7537932 ~ 7569605 (-)
AMCG00020043 nup188,LOC102792001 coding upstream 322431 7766925 ~ 7785992 (-)
AMCG00020051 NA coding upstream 347804 7792298 ~ 7797939 (-)
G60387 NA non-coding downstream 628262 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 733236 6679178 ~ 6695776 (-)
G60356 NA non-coding downstream 939635 6487309 ~ 6489377 (-)
G60345 NA non-coding downstream 984279 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 1070073 6300656 ~ 6358939 (-)
G60540 NA non-coding upstream 128103 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 408507 7853001 ~ 7854373 (-)
G60656 NA non-coding upstream 600115 8044609 ~ 8047241 (-)
G60723 NA non-coding upstream 1349474 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 1354470 8798964 ~ 8799167 (-)
AMCG00020019 NA other downstream 957578 6467271 ~ 6471434 (-)
G60348 NA other downstream 962426 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 967584 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1256538 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 2136339 5291590 ~ 5292673 (-)
AMCG00020066 fam69b,fa69b other upstream 1368291 8812785 ~ 8828109 (-)
G60746 NA other upstream 1394717 8839211 ~ 8839945 (-)
G61170 NA other upstream 3310974 10755468 ~ 10756419 (-)
G61269 NA other upstream 4251197 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 4557206 12001700 ~ 12052211 (-)

Expression


Co-expression Network