AMCG00020035


Basic Information

Item Value
gene id AMCG00020035
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7364054 ~ 7385762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020035
ttcttctcaggGATCTTCTGCACAGAAACTCTAGACAAATGCTCATCTTTTCCTTGTCTGAACAATGGTACTTGTGTGGACATGATTGATGACTATTTTTGCCACTGTGCCAATGAACCAATCAAGTATATGGGGAAAAACTGTGAGGAGCTGTATGACGCATGTTCGCTGCAGGTCTGCCCAGCGTACAGTAACTGTACCAGCACACCTGGCAGTGCAGAGTATATCTGTAGCTGTCCAGTTGGCTTCACAGGCCCAAACTGCACAACTAACACCAATGAATGTGAAAGCAACCCCTGCACTGGATATGAAACGAAGTGCGTTGATGGTGTAAATGGATATACTTGCCACTGTCCTAACGGCTATACAGGGAGCGACTGCCTGGCCCGAATTACCAACTGCTCAGACGTACCCTGCCATCATAATGGAACCTGCATCGATTTGGACGGCAGATACCTGTGTCAGTGTCTCCCGGGTTTTCGGGGGGACTACTGCGAAGAAAACATCAACGAATGTGAGCCCATGCCCTGTAAAAACGGGGCGATCTGCCTGGATGGTATGAACGAGTACCACTGCTTCTGTGTGCCGGGATTTCAGGGCAACAACTGTGAGATCGACATTAATGAGTGTGCCTCCAGGCCGTGCGAGAACAACGGCACCTGCATCAACGAGAAAGACCGATACGTGTGCGAGTGCCGGCTGGGATACACAGGAGTGAATTGTGAAGTGGAAATCAATGAGTGCGAGTCTAGCCCGTGCCAGCATGGGGCCACCTGTCAAGACTATGTGGGGCGATACACCTGTATGTGCCTTGCGGGCTACGAGGGACTGGACTGTGAAGTAGACATCAATGAATGTGCCAGTGAACCTTGCCACAATGGAGGTGTCTGCCATGATCTGGTGAACGGGTATGGCTGCTCCTGCGCTGATACAGGGTTTGAAGGGGATAACTGTGAGATTGATATTCCCGAGTGTGCATCCAATCCCTGCCAAAATGATGGCACCTGTATCGACGGCGTTAAACTCTACAGCTGCCTCTGCTGGAGTGGTTATGAGGGGCAGTACTGTGAAGTAGACATCAACGAATGTGCAGCAGAGCCATGTGAAAACCATGGCATGTGCTACGAGCGGTCCCAACACGCCTACTACAGCACACTGCCCGACTTCCCACGGGAGTTCAGCTACTCGGTGGCGGCAGGCTACGTCTGTCACTGTCTGCCTGGGTTTACAGGAGCTGGATGTGAGACCAACATCGATGAATGTGAGGGTAACCCCTGTCAAAACGGTGGCACGTGTGAGGATGGCATTGCAGAACACAAATGCCACTGCCCACTGGCAGAAAAAGACGCCATCCCTTGGGGTGGTCGAGACTGTGAAATACAGTTGGTGGGCTGCACAGGAAACGAATGTCAAAATGGAGCCACGTGCACGCCAACACTGGTAGAAGGATACCATGACTACACTTGTCAGTGTCCACCAGGCTTCTATGGCCAATACTGCAACATCACAACAACTTTCTCGTTTAACTCTGTTGGCTTTATCCTTATCAACGCTTCAGAGAGCAATAGAAGCAAGAGGGATGTTGGCTCTGAGGGACTTAGCATCAGCCTGCGCTTCCGAACCACCCTACCTgatatgattatattttacagGGGTAATGAACTCGATTTTCTGTTCTTGGAACTTATCTCGGGTCAAATCCATGTTAAATCACGTGTGGAAACAGTTACATTACACGCACAACTCTCTCATCAGGTAAACGATGGAAAATGGCATGAGGTGACTGTGCGTTTAAGGACGGATTTGGTGGTGACCCTTAAAGACCCTAACTGTGGCAGTGACATATGCACAGCAAAGGACATTGGCCCAGAACAACAATCTTTTAAAACACCTAGATCTTTCAAGAAAACCTTTGTTGGCGGTGTGGGCTCTGAACTCTACCTGAACAACACAGGAAGCAAGAGTGGTTTTATTGGTTGCATGGAGGACCTTCTAATCGATTCCTTGCTGGTCTTGCCCCAAGATATTTCTAAGGGCCTGGCTACAGACATGGAGCTGGGCTGCAACAAAACCGAACTGTGTGCCCCCAACCTCTGTCTTAATAACGGAACCTGCGTTGATCTATGGTCCACTTTTCAATGCCACTGTTCCCGCCCATTCCATGGTGAACGCTGCTTGGATGAATACACACCACTGACTTTCAGTCGAGAAGATTCATCGAGTTATGCCTCCTTCAATGTAAGCCACAGCTACGGATCCACTTTTAACGTCTCATTTTTCTGGCGTTCGCGAAAAGAGAGTGGCTTAATGTTCCAGCTCAGGAATGACCAGAGTGCATACTTCACCGTGTATCTAGACATGGGCAGGATATACTTGCAGACACTTTCCACCTTGGCATTATCAGTAAACCCCCTGTACAGCACTACTGGTGGAAAGCAATGGCTCAtggttacatttaattatggcAACATTAGCTTCAGCACTTCCCATGATAATATACAGATGCAAGTGGTCCCTAATGTTCAAGTTCAGGCAGGGGATTTGGCCTTTGTAGGAGGTCTCCTCTGGGAAAATGAAACACAGCCTTGGGGAGGCTATTTCAAGGGATGCCTACAGGATGTGCGACTCAACAACACGCGTTTGGCATTTGAGAACGCCAGCTCCAGCAGCTCGGAGGTATACAGCATCCTGCAGGACAAGGATGTGACAGTGGGCTGCGTCAGTGACGACACCTGTCAGGCGACACCGTGTGAAAATGGAGGCACCTGCAATGTTACTTGGAACGACTATGTTTGCTCCTGTCCTGAGAATTTCACGGGCAGAAACTGTGAAAGAAGAGTATGGTGTAGCAGCAAACCCTGCCCCCCCAACAGCCAGTGTCTCAATCTGCCTGATGGATACGAATGTGTGACCACTGCAACTTTTAAAGGGGAATCCCCTATTAAGTACACTGCCAACATGACCCTCAGCCGGCCAATTACTAGCATCTCTCTGGATGTTCGTACCCGAGATGAAGACGCTGTGCTTCTTCGTGCCACCAATGGAGTCGAGTTGTTCTGTGTTGGCTTGCATAACTCAACACTGGTTGTAAAACTTCGGACTGGGAATAACTTCGAAATCCTCTCGTTGTTCAGTGAGTTTCCTATTTCAGATGGCCTGTGGCACAAAGTTCTGGTGTCAATGGCAGAACCCTATCTCGGGTCTTCAAAGTGGATGATTGTGGTGGATGATGAAAAGAACACGAGCAGTTTGGATGTGGCAGGAAACCTCAATTTCTTGAATGAGTCTGTGGTGTCACTGGCTGAAAATTTTACCGGTTGCCTGGGAAGGGTGAGGGTGGGCGGTGTCCATCTTCCCTTCATTGACAATGACATGGCTCCTCAGCAGGCGAGGTTTATCAAGCACAACGGGGAGGAAATCCAGACGGGATGCATGGGGTCCCCCGTCTGCTCTTCCCAGCCATGCCTCAACAATGGTGTTTGTGAAGATTTGTTTAACTTCTTCGAGTGCCGATGCTCACTCGGTTGGGAAGGCCAGTATTGCCAGTATGATATTGATGACTGCCAGTCAAGTCCTTGCCTCTACGGCAACTGTAGCAATTTCCCAGGAACCTACGAATGCGAGTGCTATCCAGGGTACACTGGAAGAACCTGCGCTGTGGATATTGACGACTGCCTTGATCACCACTGTGCAAATGGAGGGACTTGCAATGATGGAGTAGACAGCTACACCTGCACCTGCTCTCCTGACTACACCGGTCATCTTTGCGAGTGGTCATATCCGCCACTGGCGTGTGAGAAAGATGTGCTGTGTCAAAATCATGGCATTTGTAACGATGGACTTTGGGGGGCGAACTGTACGTGCACTCCTGGCTTCACAGGGCAAAGGTGTGAAATAGACATCGACGAATGTGCAGCAAATCCTTGCCAAAATGGTGGCACCTGCAAGAACTATGTTAACAAGTTTGACTGCACATGTTTACCCAACTTTGTAGGACAACAATGTGAGACAAATAAACAGGAGCAGAAGGAGCGGATCCCCCTCCTTGTGATCGCCATCCCTGTGGCCTGCGGCTGTGTGCTCCTGGTGATCATCGGCCTGATATTCATGGTGCTCACGGCCCGTAAGAAGCGCCAGTCGGAGGGAACCTACAGCCCGAGCCAGCAGGAGGTGGCCGGAGCCCGCCTGGAAATGGACAGTGTCCTCAAAGTGCCTCCAGAAGAGCGGCTCATTTGATTGGCAGCCGCCCCGCAGGCTGGACGCTTCTCTGGGCAGCTTTGCTTCGCTGCCAGCCCCGACAGACATGATCTTGGTGAAGGTTTTTGAAAGCACTGGGAGCAGTTGACCTCCTGCCAGGTGCACACTGTTGACTTCTGTATGTCTTATACACTGAATTGATTCCACTAAAGTGGGGAAACATTCCCTCTTTACTTGTACTATAGTGTAATTATTCGCCGACCAAAAGGTAAATCCTTAAGGTGGATTAGGAGCACGCCGCTGGTATTGTAGCTGGTTTGTTAGCTGGTTTGACAGGCACCTGTTGCATCTGTTCTAAGGCCTACGACTGCAACCTTGATTGAAGACGTCGGCAGCACAGGGAGAACTATAACTGCCAGCTATGTAATACTGTCAGtcttacaaaatgaaatgattcCACAAAAATGGATTACACTGTGTTCAGGACAAAGCCTTCTGCATACACAGAAATAATCCTCAGCCCACGGCTGTAGATAAGTTTATACTAGTTCCCTTATTCCGACATCTCaactttcagattttttttttttttgcaagagtTACCTGTCAAAGACACGACGCACTactacaatatatgtattttctttgttttgtgatCTGTGATACctaaattattttctgaatgtcATAACTGTGCTTACATTGTGTTAATGACTGTTTTCTTATGTGTGTTAAGAagataaagagaaaaacaatgcGTCTAAAATGTAGTTGTAAGAATAAGGTGTAAGTGACTAACATCTCCTTTTTGGATGAAGAACAAAATGCACTGGAAAAAGGCAGTGTTGTTTTTGATGACTACTTTTGAAATTCAAGCCACTACTGTATTTAAGAGCTGATTTTATGTCTTTATAAAAATGGTGCTGAAATTCTCCAAAGAAACACATCGGAGCAAAACATTGCCTTCAAAAAGCAGCTTCTGTCCACAGCCAACATAGAAGCAAACATGGGTCAATGTTTGGAGAAGAACTTTCAAGGAACTGCATATCATAGTACATACAGTACATGGAGAGTTACATACGTGTGGCACTGATTTTGGTTTTGATAAGGGGAAAGCAATTAGCATGTAGCATGTGTATGTTGAGAActggacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaccgcTTTCCTCATCTCAAAACATTGCTATTTCATTGTATGTATGCTGGTGAGGAATATTTGATGTAAACTGC

Function

GO: NA

KEGG:

id description
K16681 CRB; protein crumbs

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020035 True 5462 mRNA 0.47 11 7364054 7385762

Neighbor

gene id symbol gene type direction distance location
AMCG00020027 lhx2,lhx2b coding downstream 237431 7112813 ~ 7126623 (-)
AMCG00020026 NA coding downstream 355998 6986536 ~ 7008056 (-)
AMCG00020025 NA coding downstream 440581 6898884 ~ 6923473 (-)
AMCG00020024 NA coding downstream 467065 6869573 ~ 6896989 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding downstream 772951 6569055 ~ 6591103 (-)
AMCG00020034 NA coding upstream 43250 7429012 ~ 7444494 (-)
AMCG00020033 NA coding upstream 59719 7445481 ~ 7453075 (-)
AMCG00020039 ntng2a,LOC103151468,LOC107664998,LOC104943762 coding upstream 121599 7507361 ~ 7515691 (-)
AMCG00020038 NA coding upstream 152170 7537932 ~ 7569605 (-)
AMCG00020043 nup188,LOC102792001 coding upstream 381163 7766925 ~ 7785992 (-)
G60387 NA non-coding downstream 563304 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 668278 6679178 ~ 6695776 (-)
G60356 NA non-coding downstream 874677 6487309 ~ 6489377 (-)
G60345 NA non-coding downstream 919321 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 1005115 6300656 ~ 6358939 (-)
G60540 NA non-coding upstream 186835 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 467239 7853001 ~ 7854373 (-)
G60656 NA non-coding upstream 658847 8044609 ~ 8047241 (-)
G60723 NA non-coding upstream 1408206 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 1413202 8798964 ~ 8799167 (-)
AMCG00020019 NA other downstream 892620 6467271 ~ 6471434 (-)
G60348 NA other downstream 897468 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 902626 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1191580 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 2071381 5291590 ~ 5292673 (-)
G60516 NA other upstream 55041 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 1427023 8812785 ~ 8828109 (-)
G60746 NA other upstream 1453449 8839211 ~ 8839945 (-)
G61170 NA other upstream 3369706 10755468 ~ 10756419 (-)
G61269 NA other upstream 4309929 11695691 ~ 11701645 (-)

Expression


Co-expression Network