AMCG00020061


Basic Information

Item Value
gene id AMCG00020061
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8313813 ~ 8326375 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020061
GGAAGTGCTGGCGTTTTATTATGAAGCTGCAGTTTAAAGATGACGTGATCTGTTTTTGAGAGGatatttaacaatacaattCGTGGatatgtgtctgtatctgtagTTTAAAGATTACTTTACGTTACTAAGTATGCCGTGAACTGAAAGCATACAGTTTCCTTTCCTCTGTTCAAGGCTGTGAGAGTGAAAGCAGATATTCTTCAGGAGGATACTCAGCCTCTTTCATTTCAGGAGAGAAAACCTCTGGAAAAGGGACTGCCATGTTGGACTTCTGTAAAGTGGGAGGCTATCCTGTCTATGTCCTGTGTCTGCTGCTGATAACCTATCTACTGAACCAGCTGGACCGGTACATTCTGGCCATAGTCATCTTGCCATTGGCGCAGGAGATACACTTTGGGGACAAGAGTTGTCTGTCTAACCGGACGACCAGACCCGGCCCAGAGCTGTGCAACAACGCCAGCAGCGACAGCCAGTGCGTCTCCTTACTGAACTCAAACGGGACACCATACTGCAAATGGGACTACAATGGCAATGGATGGGAGTACCAGATTATGGCCGGGCCCATTTTTATCCTCATCTATACGTTTATGGGTATTTTTATTGGATTCCTTGCTGATGCCGCTAATCGAAAGAATCTATTGGCCATTAGTCTACTGTTCTGGAGTCTCATGACTTTCCTGATGGGATTTGTCTGGGAGTACTGGCACCTTGTGGTGCTGAGGGAGGCAGGTTGCACCCCCTTTGCAGCCAGCTTGATCGCAGACTATTTCCCTGAATCTGCCAGGGGTTCGGCCATGGGCTTCTACAATTGGGGCATCTACACCGGATACAGCCTGGCTTTTGTAGTTGGAAATTATATCACCAGGGCCAACATCATGGGCATGGGCTGGCGCTGGGCCTTCCTGATCTGCGGGTTCCCGGGCTTCGTGCTGAGCCTGCTGGTCTTTGTGTCAGTCAGAGAGCCGCCGCGCACACAGAAGGCCACCGAAGGAGGACAGAGCGGGAACTACACGTCCAGCCTGTCGCTGTGCCACAGATTGACACCCACCCTGCGGCCATTTCTCAGCCCTtccctgctgctgctctgtCTGGCTGGCTCTGTCAGAAATGCAGGTGGCTACGTGTGGGCCTACAATGCCCAAAACTACTTCAACTTCTATTTTCCCAGTGAGGACGTGGGGCGGTGGTTATCATGGATACCGTTAGTCGGTGGCAGTGCCGGTGTCTTGTTTGGTGGATTCATTTCTGACAGAGTGGTAAAGAAGAGGGGACTTACTGCCAGAATATGGGTATTAGTTATCAGTCAGATGCTGGCAGCTCCCTTCTTGTTCGGTGTGCTGTGGCTGTCCCCCCCATATTGCTTTCTCCTGCTGATTCCAGCTAACATCATTGGGGAGATGTGGGTCGGCGTGACTCTAGCCATTCTGGTGGAGCAGGTTCCTGCCAGGGTTCGCACATCTGCTGTGGCCTTCTACCTCTTCATCATCAACAACATCGGAGGAAATGCGCCTCTCCTTGTGCCCCCCCTCAACAACCTGTACAGCTTACGCGTAGCTCTGTTTATACTTTTTCCTGGAACATATGTAGCCGggTCTCTGCTGTTCCTGTTTACACTTTGTGTCACACGGAGAGACCAGCGTAGGATCTCTGGAGAAGAGTCGGAGCCGTTGCTCCAGGAGACGGATCGGGATTCGCAAGAgcacaaaaaaagcacatgatCCGTGCCAGGCTTGTGTCAGGAAAAACCTAGGCAGGTAGACTGGATAGGCAGGTTGGTAGGTTTCACATTTAGATGCCAAAAATATTGGCACTTTTCTTTAGTGGTAGTTTTTTCATCTCCAAATAAAGATTCTGTCATCTCCTAAAAGTTCAATCAAGTGAAGGTTTCTGCCTATAGAAACAATCCGCTTTACTgcatcaaaacaataataatgttagcaGGAGATATTTACATAACCTGACACACATTTTTTGACAACTGCCTCACAATCTTTTATGTAGTCCCCCTTCTCTAAATTGGTTCAGTTCTTATTTATCAGATCGTTATCAGTACGTGTCTTATGCTGGTTATAATTCCACAAATTCCTGACTAGTTCATGGTGTCCCACAGGGCTCTGTTCTTGGACTCATTTTTAACATCTATATGCGGCCACTGGGTGATGTAATTTGAAAGCATGGTGTTCAGTTTCACTCCTATGTAGATGATACACGGTCAATTCTGACACTTAATTATACTAAGTCTGAGTTACTGGTCATTGCATTTAATACCAAGCTCTGTTCCTTTCCTGGGTTATCAGAGTTTTACACAGTACTTCTCAGCTTAGGTGTCGAATTAGACTCTGGGCTCTCatttgaaaaaacatatttcctcAGGGTTAAAGTCTGGGTTTTATCATCCTAATTAAATCTCCAGAGTTTGTCGTTTTCTGTGTCCTAGAGATACTGAGATTCTAAttcatgcttttgtttcttcctgATTGGACTACTGTAAAGCACCTTTTGCTAACCTTCCTGCTTGTCTTATAAATTGATTGCAGATGGTACAAAATGTGGCAGCTAGATTTTAACAAACACTAGGCGGTCAAAACACATTACTCTGGTTCTCAAACATCTCCATTGGCTCCCTGTCCATTACcgcatttattttaacatagtGCTGCTTACATATTAAGGTTTATATTCCAAAAAGACAGCTGTGATCTTCAAGCGCTGCACTCCTACAACAAAATATCCCAAAACGCATCACACTTGGTGGGCATAGTTTTAGTTGTCACTCCTTCCCTGTGGAATTCCCTCCCAGATTTAATTAGAGATTCTGACACAACTGTTCCTTTTAAAATtgcactgaaaaacattttgagtcTCTACTGCATTTGGTtctctgtaatgtattttattgtattttaatgttttctacaattatgtatttaaatggatcttctgcttttgtgtttttgtttttgacttgtaaagcactttgagcCACTTCAGTGTGAAAAGTGCTATAATcaataaaagttattattattactttattttacacaggATTGAACAGGAATACTGGCTCAAAAAGTGTATACACCACAGTGAATGTATTGTAATCCCTAATTTCCTCAGAAATCTTACATATAATTCTCTTGCATTTCCTGTTCATGAAAATGGGCAAAATCTTGAAAATATTCCAGATGTTAGGCGGGGTCCAGCAGCTGCTTCAAAAGCATCTGTGCCTTTTTCATCTTAGCCCACTGACCTCCCATCCGCCTCTGCTCCCTCTTCAGTGTAACGAGTATCTGTCAGACAGTAGACACAGACCCTGTTACCtccacagcacagctcttttTAATCAAAGATGTGAATAGAGGTGGCACCAGAAGCTCAAGAAGCAGAGGGTTAAATTAAGTTTTTAACGCAAAGCTTTAAATCGAGTTCGCTGCTCTCTAAACAGCTTTTTCTCTTGAAGAAGATTAAGAAATTAAGCTGAGCAGTGATTAGTAAGGGTTACTGCTTGAGAGCAGATTGACGGGTGTGACTCAGAATGTGAGCAACAACGAGCTGCTCTATTCCCACTTCATGGAAAATGTACTTGTTAGGACTTAATAATGCATCCATTTACAAACCTGCTATTATACAGTCCTGATGAGCCACATTGTGGATAAGAAAGAATACACCTGACCAATCAGCTATCAGCTTTACCACAaaactttgtaatgtttaaattacatttattcataGCACTAATCCATAGTTCCACTTATCGATAAATGCATGTTGGAAGGAACagtgaaaatattaacattCTTTGGAAAGTCGTGCCAGTGTTTGTGTGGTAGAAAGTGGGAATTCAAAAGCAATGTGAAATTAGGTTAAGCCTAAGGCAATACATGTTGTTCATGGACAAAGTGCCAATTTCTGATATACAGTCATTAAGAGTTCATTTCCAAATAAGTATCAATCAAGGGtcttaaaaagacaaaataaaacttgtattgtaaaacatattaaGCACTTGATAATTTTACGTGAGAAAAGAGCAACTGAAATGAAGGCACTGTTTCCTgctattttgttatgtatttgtccaagattattttggtttaaaatattgatacTGATGCTGATAAATGTTCCAATGGTCAGATAATTGAGTctttaatgaattaaatgaacttttcatatgtgtgtgtatattagtTTCGCTCTGTATGTTTCGCTTTATTGTAAATCCACTGGACTGTGCTTATGTACCAAAGACATTTGACCTCCAATACTTTCTGGTAGAGCTGCCTTTTCTtggatttaaaacatattctgaAGTAAAACCATTAGAAAATGTTTGTCTCTGGCAATACTTGGTTTTGGAATCCTGATATGTAATTCAGAGACAGTACTCTTTGACAAACCCATAGAACAACACTCTCATTATGTACCACTATATTTTGTCATGATTCTCCTTTTCATTAAGAGAAGCCAGcaaatgtcttttaaaacatttaataaaatatgtctgCTTTATTATCCAATATTGTGGTTAGAAAATTGTGGCAGCCGGAAGTggccatttaaaatatataactacCTACGTACAGTATGTGTGACCAGATtgaattttacttaattttgtattaatgtgagCTGTCTGCTTTCAACATGTTAGTGCAGATGTTGTTTTAAGCATGGGATATTGGGGActtgtttatattaaaagatTATTCAACTGCTGTTAATACTAAGTAGTAAATGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020061 True 4747 mRNA 0.41 11 8313813 8326375

Neighbor

gene id symbol gene type direction distance location
AMCG00020062 NA coding downstream 7861 8302263 ~ 8305952 (-)
AMCG00020058 NA coding downstream 178862 8134181 ~ 8134951 (-)
AMCG00020057 rxra coding downstream 197777 8090305 ~ 8116036 (-)
AMCG00020055 NA coding downstream 241883 8053819 ~ 8071930 (-)
AMCG00020054 vav2 coding downstream 385946 7881820 ~ 7927867 (-)
AMCG00020067 NA coding upstream 528441 8854816 ~ 8876263 (-)
AMCG00020081 NA coding upstream 638186 8964561 ~ 8966030 (-)
AMCG00020078 fnbp1 coding upstream 695448 9021823 ~ 9049768 (-)
AMCG00020077 NA coding upstream 751365 9077740 ~ 9083125 (-)
AMCG00020082 NA coding upstream 789098 9115473 ~ 9127068 (-)
G60656 NA non-coding downstream 266572 8044609 ~ 8047241 (-)
G60610 NA non-coding downstream 459440 7853001 ~ 7854373 (-)
G60540 NA non-coding downstream 740982 7572597 ~ 7572831 (-)
G60387 NA non-coding downstream 1513063 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 1618037 6679178 ~ 6695776 (-)
G60723 NA non-coding upstream 467593 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 472589 8798964 ~ 8799167 (-)
G60730 NA non-coding upstream 480645 8807020 ~ 8809893 (-)
G60774 NA non-coding upstream 653898 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 831552 9157927 ~ 9160733 (-)
G60516 NA other downstream 751221 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 1842379 6467271 ~ 6471434 (-)
G60348 NA other downstream 1847227 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 1852385 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 2141339 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 486410 8812785 ~ 8828109 (-)
G60746 NA other upstream 512836 8839211 ~ 8839945 (-)
G61170 NA other upstream 2429093 10755468 ~ 10756419 (-)
G61269 NA other upstream 3369316 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3675325 12001700 ~ 12052211 (-)

Expression


Co-expression Network