AMCG00020062


Basic Information

Item Value
gene id AMCG00020062
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8302263 ~ 8305952 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020062
TTTGTCAGTGACCCCTTTGTCTTCTCATCCTCTCAAGCAAATGGACTCCAATGCTATGGCTGCAACATCATTGTCGGGAGGAAGTACGTGGACGTGGGCTGCTCCAACCCGGAGGTCATCACCTGCTCCCACTCACACAAAGGATTCAAGCATCGCTTCTGCATTAAAACGGAGAGCACGGCGCTGGGAATCCTTCTGACCAGCGGCTGTGCCACCTCTCGCCACTGTCACCAGCAGGAGCTGCCCGGTGTGAAGATCCACTGCTGTGACTCGGACCTCTGCAACGGCTCTCCGCAGCTTTGCGCCCGCCTCCTGCCCTACCTCTGTGGGCTCCTCAGCCTCATTCTAGTTCGGTTTCGACTATag

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020062 True 366 mRNA 0.57 2 8302263 8305952

Neighbor

gene id symbol gene type direction distance location
AMCG00020058 NA coding downstream 167312 8134181 ~ 8134951 (-)
AMCG00020057 rxra coding downstream 186227 8090305 ~ 8116036 (-)
AMCG00020055 NA coding downstream 230333 8053819 ~ 8071930 (-)
AMCG00020054 vav2 coding downstream 374396 7881820 ~ 7927867 (-)
AMCG00020050 lrrc8a,LOC104923672 coding downstream 491857 7799922 ~ 7810406 (-)
AMCG00020061 NA coding upstream 7861 8313813 ~ 8326375 (-)
AMCG00020067 NA coding upstream 548864 8854816 ~ 8876263 (-)
AMCG00020081 NA coding upstream 658609 8964561 ~ 8966030 (-)
AMCG00020078 fnbp1 coding upstream 715871 9021823 ~ 9049768 (-)
AMCG00020077 NA coding upstream 771788 9077740 ~ 9083125 (-)
G60656 NA non-coding downstream 255022 8044609 ~ 8047241 (-)
G60610 NA non-coding downstream 447890 7853001 ~ 7854373 (-)
G60540 NA non-coding downstream 729432 7572597 ~ 7572831 (-)
G60387 NA non-coding downstream 1501513 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 1606487 6679178 ~ 6695776 (-)
G60723 NA non-coding upstream 488016 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 493012 8798964 ~ 8799167 (-)
G60730 NA non-coding upstream 501068 8807020 ~ 8809893 (-)
G60774 NA non-coding upstream 674321 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 851975 9157927 ~ 9160733 (-)
G60516 NA other downstream 739671 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 1830829 6467271 ~ 6471434 (-)
G60348 NA other downstream 1835677 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 1840835 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 2129789 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 506833 8812785 ~ 8828109 (-)
G60746 NA other upstream 533259 8839211 ~ 8839945 (-)
G61170 NA other upstream 2449516 10755468 ~ 10756419 (-)
G61269 NA other upstream 3389739 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3695748 12001700 ~ 12052211 (-)

Expression


Co-expression Network