AMCG00020078 (fnbp1)


Basic Information

Item Value
gene id AMCG00020078
gene name fnbp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9021823 ~ 9049768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020078
TATGTGAAAACTCTGACTTGTCTCTTGCAGGCCAGACAGCAGGCACAGCTACGTCACCAGATGGCAGCTGACAGCAAAGCTGAGTATTCAGCGTACCTGCAGAAGTTCAACCAGGAGCAGAATGAACATTACTACACCCTCATACCACACATTTTCCAGAGAATCcaggagatggaggagaggCGGATAGAGAGAGTGGGGGAATCAATGAAGACCTTCGCGGAGGTCGATCGGCAAGTGTTACCCATCGTGGGCAAGTGTCTGGATGGCATGACCAAGGCTGCCGAGTCCATTGAGCCCAAAACTGACTCTAAGCAAGTAGTAGAAGCTTTCAAATCTGGGTTTGAGCCCCCGGGAGATGTGGAGTTTGAGGACTACAGCCAGGCGATGAAACGGACTGTCTCAGAGTCCAGTCTGTCCAACACACGTGCGGATGGCAGGCCGGAGAAGCCCACCAGCAAGACCAAGGGCAAACTGTGGCCTTTCATCAAAAAGAACAAGCTTATGTCCCTTTTAACATCCCCACATcagccccctcctcctccccccgcCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAGCCCCTCTCCCATCGCCTCAACGAGTTCATGACCTCGAAACCCAAAATGCACTGCTTCCGGAGCCTAAAGCGCGGGATAACTCTGAATGCACAGGTCCGGAATCTAATCGAGGGTTCTGGACCAGAAGATTTTAGCCACTTGCCCCCAGAGCAGAGGAGAAAGAAACTGCAGGCAAAGATTGATGACATCAACAAAGATATCCAAAAAGAGATGGACCAGAAGGATGCTTTGACCAAAATGAAAGATGTCTATATAAAGAACCCCCAGATGGGAGACCCAGCCAGCGTCGACCCGCGATTGGCTGAAATCGCACAGAATATCGAGAAGCTGAGAGTCGAGGCACAGAAATTTGAAGGCTGGCTGGCGGAGGTGGAGGGCCGGCTGCCTGTGAAGAGCGACCCACCACGGAGACAGAGCAGCATGTACGACACTCAGAACAGCACGCCCGTCAACAACAACTGCGCACAGGACAGGGAGAGCCCGGATGGCAGTTACACAGAGGAGCAAAGTTCAGAGACTCAGATCAAGGTGCCAAATCCCGAGTTTGATGACGAGTTTGATGATGAAGAACCTCTCCCCACCATTGGCACCTGTAAAGCACTCTACCCGTTCGAAGGGCACAATGAAGGCACCATAGCTGTGGCGGAAGGGGAGATGCTGTATGTTATAGAGGAGGACAAAGGAGACGGTTGGACCCGGGTTCGAAGaaacgaggaggaggagggataCGTGCCCACGTCATATGTCGAAGTCTATTTGGACACAAACGCCAAAGGTGCTATGACATACATTTAACTGTAGACATATGAAGGGCGTCCAGAGTGCTATCacttgagtttttttttaccagtgCCACGAATACATTCAAGTGGCAGAACAGGACAGCCCTTGTGCTGGGCTTACCTATTCCATAAGTGACAGTGcagaacaatttaaaacacCCTTCATCACTGACTCAGCTCTTGATCTCACTGCTGAAGTCAGCATTGTAGCTCTACATGAAAGGGGAGCGTGAGGGGTGGGGGTTGCTGGAGGTTGAGGCCCTGTAGGAAAGTTTTCACAATCTCCTCCTTCTCTTTGTGTATACTActacattgttttcttaaaaaaaaagaaaaaaaaacatctttaagtGTGTTGTGCATTCAGCTCTGAAGTGCTGGTAACTGTGGAGGAATGCCATGTAGGCTGGAGAGCAAACGCATTAAAGAGCATCTTCCCTGTGTTGGTTGCACTGCTCTGTAAGGAAGGTTTTGTTAACTTGTGCGATACGTTTCCTCAATAAGCACAATCAGTGGAGAACAAGGTGTTGCTCCCTTCTCTCTCAGCTGTTTTTAACGTTTTAACGATAGCAAAATGGTGCCATAAGTGACTGAACAgatgtacataaatatttaaaaaatgaacaggtTTGCAGTTCcttaacattgtttttgctgCAAGCCTCAATGCtgcatgttttattgcatttactagtactattaatattacatttttgtattatcctCATTGCTGTTAATGATCTCCAAATGTATAAACTCCTAGTTTATACACTTGGATaatagaacataaaaataacatgacaATGTAGCATGACACTGACATTTTCACACATCCTAGCAAGAAGCTTCTTTCCTTTTATCACTGAGCGGGTACTATGTATATGTACagcttttgaatgtttttttgtattattcatttggCAATCCTTTCCCCTTTctactaaaatgtatttgcttaacAATAACAGATCTATAATCTCAAAAAGGATATTTCTGACCTGTTTTTTGCAGAACAGTTTACCATCCTTGCTGTGAAACATAAAACAGACTAGGTTAAGAagttaaaaataagaaacattggGAAGCAGTTTTCAGTGATTTTTTACGGTTGCCTTTAATTGCTGTTCTTTTAAATCATCTTACAGATAACACAAACCATATTTCCTCCCATTTACGGGATTTCCTTTAATTTCCAGGACTTAATATTCATTACCAAGGTTTCTTCGAGACATTTGGTTGTTTTCTGATTGCTGTTTGGTGCTTGGTCAGTCCCTGCACAGCATTCAGGTTTTGTCAAGTTTCTTCAATAAAGAAAGACAATTCAGTGACTGAATCCTTTTAAACATCTCTTCTTAAGTAAAGTCACATCTAACCAGATTGCTTAATGCaggtaaacattttgaaatccaCACTTCCTCCTCCACAACACCAGCTCTTTACATTAGTGATACCATATGTGACTTTTGGGGAAAATATACACCTTCTGTCTAAACTAACACTATTTGACATTTAATTCTCAATATACATATCTATCTGTGGGAGTAAATGTATGAGATGCACATGTTCTCCTGATGAGGTAGTACAGATTTGATTTTAGTGAACTAAGAAATCCTGAACTCCTAAGAATCTGTATAACAAAAATCCCACCTTCTGTTTCTTGTATAGTTTGCTTAACAGTTTATGAAAAACTAATTGAAGTCCCCCCAGCTTCAGCATTAGGAATGCATGGGAGGTTGGGTTTGTGTATGTGATGTTATTCTCTTACTGCCTTTTTCTAACAAGTGAGACGCTACCCTTACGAGTCTTCGTATCCAAACCTGACATGTTGCTTGTATAGAAAATGACTGTTGGCATTCGCATGCTTGTCTGGGATTTTTTCTACTACGTGaatcaaaaatattttccacCCTTTCCATAATAAAATCTCAAATCCTCATTCACACCCTCATCATTAGTGAAGTAACAAGCATCAGTTGTAGGGAAACAAGCATGATGTAAGGGAAAGTATACTCAAGTTGGTTTTAAAACagcatgaacattttttttttcaacaaccAAAAAGCACTGCACTCCTTGTGTGAAAGTTGTACAACAGAAGATTAAGTTGGTTATGCACTAGTCATGTGTACAATAATACTGCTATAAAAACAGTCTCTGTTCGCATGAACGTGTTCGATGACAAGCATGGAATCTTACTAGTGGTCTTTGTTCTTTCTAagcggttttgtttttttaaattgagacAGTCACATTTGCAGATAATTAGCCAATGTCAACTGACCATCCCTTAACAGTATTGGACTATtcatcattttttctttcatgctaATAAAAGCTGCATCTGCACAGTGGCAAAATTCTATTCAtgtgatcatttattttttcttgaccGTATATTACTCATATAAGCATTCTGATATGTCCATGGCAATAATGAAATGATGTGACTTGATGACTGTGGGTTTAATGAGATGCATGGAGCATTTCTTTTGCATAACAGAAGGGTGTTTGCATGCTTTATGTTGGTTTAAaccaatgtatttgaaatgttttataggATGCAGTGAATTTGCAGAAGATCTGTCTAActaagacaaacaaaaaatgttttagcaatataatgagatatacagtatacagtataactCATGCAGTGATAGGGTATTCagaatataaacatattatacattaaagCACTTGTCCCTTAATTGTAAATGACTAGCCAATGCAGTGTTGGATTTCAACAGGATTGCATTGTCTGTCTTAAGGGAACGTGAAAATCTGACACTCTTTTCTCCATCTCAAGTTGTGATTAtgattcttttattttccttttgcatCCTATCtaacttgtttttgttatttgtttttttgttgtttttgttttttgtttttgtttaaattgcagATTCCTAAAAGTGTGGGGCTGGCACAGGAATCACAGGGCAAGCTGCTTCTGGAGAAACCCATCCTCCTCTTAAAAGTCTTTTGTCAGAAAAGACTAAAGAAAAAGGGGACAGATTAGGACGCATTTGAATTTCAACactcaaaacaaaagaaacaaaaatcgaTTGATCACTCCTCCAGCAATGGTAgtttgaaagagaaaacaaaagaaaccaaacTAAATTTAGCAACCATCGCATTTTatcatttgctttttttatttctgcaagGCATGCTTCTCGACGTACTAACTTGGCTTCCTTTTCTGTGTCAGCGGTGGCCATTTGCTAACGCATAAAACTGTGAAAAAGCTGCCAGTCGTACAGGTGATCTCACCAGATGGCTGTACCACAGGATGAGAAAGCACATCTTCTGAAACTTGGTGTCTAGAGCCATTTATCAATATTGGATACAGCAAATGCATCTACTTTAACTCTAGGAGTGTTGTCATGGTGCACTATGAAGTCTCAACACAGTGTCCACTAATTGCAATTTCTTAGATTTCACTTAGATCTCCCTACTTGTCACATTGCACTCACTCATTTGCCACACTGAGGTAACTAAAGAGAGACAATTCAGTTAGCTGCAGTTCTGTCAAAAATGTACATCAATATCCTAAATATGgtgttgttgattttaatgATCAATCCCTTTAAAAGTGCAACAAATTAGTACTTCAGGGTATGAAGACAGGATGGTCTTTCTACCATGCAGTCTTCTTTTGATGTACTGGTTGTCACACTTTTATGAAGTGGGATTTGGACAGAAGGCCCTATGCATAGAGCACTCATCTCCGCCTCCCCTGCACTTTCTCTCCTGTGATGCACTCTCTGGTGTTGGTTCCACTATTTTGCCCAGACCGAAATTCTAAGCCACATCTTGATTCTTAATTtcgcatttgtttttctaagcaTGCATGCTTGCCCTGTCTCCCTGCCTCTGCCGACCTAGATGGGGTCTGACCCTTTTGCCTGTCGTTTAATTTAACCATTGCCTGTACagttataaatgtttttgattttttagttgttgtttttttactttgtgcctgtgttttgttgttttgttttatacttttatttttccgcATGaccacctgtgtgtgtgtgtgaatttaaaATTGTCTGCACTCCTGGTATCTTCACTCTCCCTCCCCTGATCAGGAAAAGGTTTGAGGGTCACAATTTTGCATTCGTTTACTTGTTTATGTAAAAAATCTAGTTGAAATTGCCCTTTCtcttaaggaaaacaaatgagtTACTGCCAACTGATGTGAACAGTGTTAAAACTCTTTATTACCTCATTACtcaattttatttaagtttgttAGCTTTCATCATCAGGTTGAACCCAGATTGAAATCCTTTCAAATCCAGTAATGGCCAATCTCCCTGGAATTTATACTTTCTATTAAGCAAGAAAGTAATTTTACAGGACAAAATAAAGTGTGCTTAGTGGCCTGTGATGCTATTTAACCGTTCTGTGGTccatataaatatttttccttGAAGGTGTCTAAGAATATGATGCAGCAAAGTTGGGCATTACTGGGTTGCTTAACTAATTATCGGATTGATTTTGATTAGATACCAATCTTTTAACTGTGGTATGTATGATTATttgaacagtttttctttttgtcaaaGATTGTTACTTTTTGAACGGGGAgaaatttgatttgtttgtttggaggTGGACAGTACATTATTGTCTGCCCAATGCAAGCAACATATATCAGTATATTCTGCTCTTTATGGCACATAATGTATATAAGCAGTTTTCATGGAGCTGAAGCGATATCATTAGCCCGTTGCTATCCTCCCCAACcttaggaaaaagaaaaaaacaatctgaaggAATTGTGTAGTTGTCGTTCAAATTTAATTGAACTTATTGGTGCGTATGTTTGCAATATTGGAAATGGCCCAGGATGCATGGgatatttattcaaaaacacatttctaaatacaaAACTGCTGGTTTTTAAGATATTCAATGCAAATTccacataacaaaaaaaaaacagctctggTACAACCAACTCTGGattgttaattatttgaaaCTCCTGCATTAAACTCAGTTACCATGAACGGTGCTTAGCAATCTTGCTCATGCCCACAGCTACATAGATGTTAAATGGAGAATCTGTGATGTAAACATAGAGCGTGATTAACCATTCTGACATTTTCTTGTAGTTAATCTGAAATAGCTTTATAAACGAGAGAACTGTTCTTGAATCCCTCTTTTCTGGCACTAACCTGGCTTGGAAGAAACCGTTTCACTCCGTTGGATCTGGAACTTCAACCGATGACACTCTCTTGCACTGCAGAGAAGGAAGACCCAATGTATTTCATCAAGCACATTAGGCTGCTGATGTTGTCCCTCATGcatgatgaaaacaaatctcaaaacaGTACTTAGCCATGTGTAGAGGAGAAGTCAAGATAGTTGATACTGTTTGTAACTCACCCTAATATGTACAGGAGATGATGCTATCAGAatcagaagatatatatataaataaaatattaaactaaaaaatgaaaaaaaaatctatttttaaaagtttaattgtaattttattgttgttaaaatgaatAGGTTTTGCTTTGctaaataagattttttttggttttgttttgattgttttgtaaaagtcagccaaatgtttccatgtgttttgcactttttgttcGTGTTACAGTTGGTATGCTTGTGTGTCTGAGCACTGAAGTCCACAATATTTTACAGGCTACTTTGCATTGTGTTAACTGtgccaattaaataaaacaggaaaaaaacaacagcatttttGTCGTCTTACTAAGTACACAAAATGGCTACTAGACTCGTTGAATGTTAAATGAGAGTAATTTTCCTACTACAGAACAGTCTCAATGGTAATTTTTCTGCTTAAATAATAAGGTGTAAGATTAACGGTAGCAGGGTGAAGACTGAATTAAGGGGAAAAGCTCATTGTCTAATATCCTAGAGAAACGCAGTCATTTTTGACTGTGAGGGTGCAGCTCTCCCAGCAGTTTCCTGCTTTAACATGTTGCGACAATGAAAGGGGGCAGCCTGTGCTGATATTATCGTTAAATGTCTTCTGGTTAATATCAATATCAGATCCATGGCAGTTGTGCGATTGAATGTTCTTTCAAatcctcctcctctcttgcGTTTGCAGAAATTCATGCATGTGTATTTTCCAAAACATGCCTCCCTAAACATTGAGCAAAATTAGACTCTTTGCTCATTGGCTCAGGTTATGAAAAACTGAAGATTGTAATGAAACCATAGAATTAGTTCAGGACAATCCAGTTGCTGTACAGTACTGTAACATTGATTAAGTGACAATTAGTAAACGTACAATTTTagaaagtttattttaacattagaAATATATGCAAACTATAGTTATTTATAGTGTGTTAAAGCGCAACCTACAGCTGATAAAGAAGTGATTTTCTGAAATACAGTATCTCAGATCTAGTAAAAgactttacaatattttaacactttcaggGGCCATACCAAGATGATAAATGTAGTgaaaaaaacagttacaataGATTGATTAACCATTAATGGAAAGGGGTATTGCATACTTTTTACACAGATGTCAAAACTAACCTGAACTAAATGCATGAAGTAGAGTACCTACCTTAAATGTGTCTTACACTGTCCTCTGgagctttaaaatgtttgtttcagagCGGGAAGGTAAAGCAGCCCTCCAACAGCAAGCTACACCTGACCGTCAGAGAGGACAAAGcttgacagaaaataaataacttgatGTTTATGCCACCGTGCATTTACTGTTTTGGAGTGGCCCTGTAGTTCACAGACATATTCTTAATGGTTGCACAGCCACACAGTTTACTCTGTTAGTTCACCTTGCCTCTATGTACAGTGCATTTCATAATGTAATGCATCTCTAACTAATTTTAAGTAAACCTTGTACTATCAAACAAAGTACTATGGGTGTCACAATTGTGGTATATGTATTAGGTCCTGTTATATAATACGCTTACTACATGAATTTCTGTGAGAGGAGTTACTATATAGAGTCATCTtaaactatacacacacacacacacacacacacacaaaagatacACATTGCCTTGCTGTTCTGTACTCTTGAGGTCTGCCATAACAGATACAGACTCCTGGCTACAAAGATGTTTCTCTGCTTTTCATACATTGTATTGTTAAAGATGagatttgagaaaaataaataaaatgtaagacaa

Function

symbol description
fnbp1 Enables identical protein binding activity. Predicted to be involved in endocytosis and signal transduction. Located in intracellular membrane-bounded organelle and plasma membrane.

NR:

description
PREDICTED: formin-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K20121 FNBP1; formin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020078 True 8599 mRNA 0.39 10 9021823 9049768

Neighbor

gene id symbol gene type direction distance location
AMCG00020081 NA coding downstream 55793 8964561 ~ 8966030 (-)
AMCG00020067 NA coding downstream 145560 8854816 ~ 8876263 (-)
AMCG00020061 NA coding downstream 695448 8313813 ~ 8326375 (-)
AMCG00020062 NA coding downstream 715871 8302263 ~ 8305952 (-)
AMCG00020058 NA coding downstream 886872 8134181 ~ 8134951 (-)
AMCG00020077 NA coding upstream 27972 9077740 ~ 9083125 (-)
AMCG00020082 NA coding upstream 65705 9115473 ~ 9127068 (-)
AMCG00020080 cacfd1,LOC102799429,LOC106562965 coding upstream 87965 9137733 ~ 9145085 (-)
AMCG00020083 NA coding upstream 95474 9145242 ~ 9148311 (-)
AMCG00020079 inpp5e,LOC105889666 coding upstream 112238 9162006 ~ 9167067 (-)
G60774 NA non-coding downstream 4417 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 211930 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 222656 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 225508 8793968 ~ 8796315 (-)
G60656 NA non-coding downstream 974582 8044609 ~ 8047241 (-)
G60833 NA non-coding upstream 108159 9157927 ~ 9160733 (-)
G60839 NA non-coding upstream 219792 9269560 ~ 9303247 (-)
G60993 NA non-coding upstream 878209 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 1036145 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 1154071 10203839 ~ 10205678 (-)
G60746 NA other downstream 181878 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 193714 8812785 ~ 8828109 (-)
G60516 NA other downstream 1459231 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2550389 6467271 ~ 6471434 (-)
G60348 NA other downstream 2555237 6463548 ~ 6466586 (-)
G61170 NA other upstream 1705700 10755468 ~ 10756419 (-)
G61269 NA other upstream 2645923 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2951932 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 3434601 12484369 ~ 12509937 (-)
G61589 NA other upstream 3948070 12997838 ~ 12998223 (-)

Expression


Co-expression Network