AMCG00020079 (inpp5e,LOC105889666)


Basic Information

Item Value
gene id AMCG00020079
gene name inpp5e,LOC105889666
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9162006 ~ 9167067 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020079
ATGACCTTTCCGAGCGGTGTACCACCTTACCCCCTGAATGGCGTCAGTTCTTTGGGAACCCTGGAAGCTGATGAGCAGGAGGGCTTCGGCAAGGGTGAGAGGAAGCAGGAGCAGGACACAGAGGAGGAATTAAACGGAAGCTACAGCTTTCTGAACGACACCTTGAGGTTTCCACCAGATGAGAGTGGTCCAGAGGTCATGCTGAAGGACAGTCCTTATATACCCAGACCGCCCGTACTTCCAAAACCTTGTGGGCGAGCCACCTCAGCCAAGAGCTCCTCGAAGGAAGCGAAACTGAGAAGGAGGAAGATTAAAACCAGTCAGGAAAGTCTAACTGACCCAACAGGGACTGGATCTTCAACAGACTCCCTCCAGGACGATATGATTGGCCACCCTGTAGCAAATAGCACCTTGGCCCTTCAGGACAGGCAGGCCTCTTCCAGCAGTCTtcacagcagcagctccagagATGTCCTGCCCCCTGAAGCTAGAAACAGTAGCAGCAGCCATTCAGACCCAGGGAAACGGAGCTCCAATCCCTATATGGGCGACACCCAAAGCCAGATGGCAGGGTCTTTGAAAACCAAACTGTCCCCTTTGCAGCCTGTCAGACCTCTGCCTGCTGTGGTGCACAACATGGCTTCCACTTCCTTAAGGACAGCTAATAGGATAGACCAGGATTGTGTGGATTACACCTTGATGGCAAGGGGGGGCTACGAAAGGCAGCAAAGTAACCTCAGCGACAGCAGGCTTTTGGACAGTATGGTGTCGGATTGCACCTCCTTCAACTCCATGAAGTCTACGCTCAGTGTGCTCAGTCCCATTCGGCCCAAGGATGTACGGAATCGGAGCTTCCTGGAAGGCAGTGTTATGGGCCATGGTGCATTGCTAGGAGCAGAAGAGCTGGATCGGTACTTTCCCGACAGAAGGATAGGAATATACATTGCTACCTGGAACATGCAGGGCGAACAGGAACTACCTACTAATCTGGATGATCTTTTGCTCCCCTCGGACTCTGAGTTTGCACAAGACTTCTACATCATAGGCATTCAGGAAGGCTGCTCTGACAGGAGAGAATGGGAGGTCCGCCTGCAGGAGACGCTGGGGCCGTATTACGTCATGCTGTACGCAGCCACGCATGGTGTGCTGTACCTCACCGTCTTTATCAGGAGGGATCTCATCTGGTTCTGCTCAGAAGTTGAACATGCCACAGTTACAACGCGGATCATCTCTCAGATCAAAACGAAAGGCGCCGTGGGAGTGGGGTTTACATTCTTCGGCACGTCCTTCCTCTTCATCACATCCCACTTCACCTCTGGAGACTCCAAGGTCTATGAAAGGATCCTGGACTACAATAAGATCATTGAGGCTCTAGCTCTTCCCAAAGTGCTTCCTGATACCAACCCGTACCGCTCAAATTCCTctGATGTTACATCCCGATTTGATGAGGTTTTCTGGTTTGGGGATTTTAATTTCCGTCTGAGTAAAGACCGTGTAGGAGTGGAGTCAATTCTGAAACAGGACCTGGGCTCCGACATGAGTGGACTTCTGCAGTATGACCAGCTCCTCAAAGAAATGAAAGATGGGTCCATTTTCAAAGGTTTCCAAGAAGCACCTATTCAGTTTCTCCCAACATACAAGTTTGATGTCGGATGTGACACATATGATAGCACTGGAAAGCAAAGAACACCATCGTACACAGACCGTGTTTTGTATAAAAGCCGTCAGAAAGATGACATTAAGGTTATGAAGTATACCTGCTGCTCTACCATCAAAACCTCAGATCACAGGCCGGTGCTCGCTGTGTTTCAGGTGAAAGTGCGGCCAGGAAGAGACAGCATTCCTTTGGGTGCTGGTCAGTTTGACAGACACCTGTATCTGGAAGGCATCCACAGGAGGATCACCAGGGAACTGAAACGGAGGGAGGCTTTGAAGAATCAGAAGACCAGTGCAGTGTGTTCTGTATCCTGA

Function

symbol description
inpp5e Predicted to enable inositol-polyphosphate 5-phosphatase activity. Acts upstream of or within several processes, including animal organ development; melanosome transport; and regulation of cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye and pronephric duct. Used to study Joubert syndrome. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 1. Orthologous to human INPP5E (inositol polyphosphate-5-phosphatase E).

NR:

description
PREDICTED: 72 kDa inositol polyphosphate 5-phosphatase-like

GO: NA

KEGG:

id description
K20278 INPP5E; inositol polyphosphate 5-phosphatase INPP5E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020079 True 1971 mRNA 0.51 10 9162006 9167067

Neighbor

gene id symbol gene type direction distance location
AMCG00020083 NA coding downstream 13695 9145242 ~ 9148311 (-)
AMCG00020080 cacfd1,LOC102799429,LOC106562965 coding downstream 16921 9137733 ~ 9145085 (-)
AMCG00020082 NA coding downstream 34938 9115473 ~ 9127068 (-)
AMCG00020077 NA coding downstream 78881 9077740 ~ 9083125 (-)
AMCG00020078 fnbp1 coding downstream 112238 9021823 ~ 9049768 (-)
AMCG00020084 NA coding upstream 2485 9169552 ~ 9193460 (-)
AMCG00020087 NA coding upstream 140842 9307909 ~ 9327357 (-)
AMCG00020088 LOC102213968 coding upstream 233585 9400652 ~ 9444244 (-)
AMCG00020093 NA coding upstream 337319 9504386 ~ 9510745 (-)
AMCG00020094 NA coding upstream 375281 9542348 ~ 9547581 (-)
G60833 NA non-coding downstream 1273 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 144600 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 352113 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 362839 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 365691 8793968 ~ 8796315 (-)
G60839 NA non-coding upstream 102493 9269560 ~ 9303247 (-)
G60993 NA non-coding upstream 760910 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 918846 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 1036772 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 1339341 10506408 ~ 10507637 (-)
G60746 NA other downstream 322061 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 333897 8812785 ~ 8828109 (-)
G60516 NA other downstream 1599414 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2690572 6467271 ~ 6471434 (-)
G60348 NA other downstream 2695420 6463548 ~ 6466586 (-)
G61170 NA other upstream 1588401 10755468 ~ 10756419 (-)
G61269 NA other upstream 2528624 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2834633 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 3317302 12484369 ~ 12509937 (-)
G61589 NA other upstream 3830771 12997838 ~ 12998223 (-)

Expression


Co-expression Network