AMCG00020080 (cacfd1,LOC102799429,LOC106562965)


Basic Information

Item Value
gene id AMCG00020080
gene name cacfd1,LOC102799429,LOC106562965
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9137733 ~ 9145085 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020080
GCTCGCTTGGTCCCACCCATAATGCAATGCGGACAGACCTGGGCAGCTGTAGGAATCGCAGGATCTTTAAGGAATACAAACAAGCtggttgtatttaaaaaatgaagagcTTTAAGGGCGGTTTTGAAACCGGACAAAACCCTTAACGGTGTGGGTTTCGGCCTTTATGACGTCATATACCAgatgtatttttgttcttcCCAGAGACGCTGAAACGCAGCCCTATGTGGTGGAAATGCGCTGTGAGTTAAGCGGATAAAACAGTCCAGCTGCGTCTGTCTGGTGgcagtaatttaaaaaagcaaaccagGTATCTGCCGGCATGAAGTGAGAGTTTAAAGCAGGGTATTGTAGATTTCAGAGGAAAAACATTTGCTTAGTTAGTCTGGacttcttttttgttctttctttaaaaagatTTGTATCGTTTCGCATCGTGTGTTGTGTGAAGCGCACTTTTCGTTTCGCCGAAGTGGCTGTTTATCCCGGTTGTGTCGGGAGGAGGAGTATCGCTGCTGGCCGAGATCAGACCCATTGTTGGTGAGCGGCGCGTTGAATCATTCATTGGGGTAAGATGAGCTCGGGGGAGCAGCCGGGCCCGGCCAGCAGCGCCAGCAGCTCTGATGACGACGGCATGTCCTGGTGGTACCGGTGGATCTGCAAAATCGCTGGAGTCGTAGGAGGCATCTCTTGTGCATTGGCAGGAGTGTGGAATTGTGTCACCGTCAACCCCTTAAACATAGCGGCCGGAGTGTGGATGGTGTTAAATGCCTTTGTCCTGTTTTTGTGTGAAGCTCCGTTCTGCTGCCAGTTCATTGAGTTTGCGAATGCAGTAGCTGCCCGGGCAGACAAATTCCGTCCCTGGCAGAAGGCTTTCTTCTACTGCGGgatggCAATATTTCCAATATTTCTGAGCCTAACCCTCACCACGCTCTTGGGGAATGCGATCGCCTTCGCTACAGGAGTTTTGTATGGGCTGGCCTCGCTTGGGAAAAAGGGGGATGGTGTGAGCTACGCCCGACTTCAGCACCACAAGCAAGGAGATGAAGAGAAGATGACTGGAACAACTGATGGGGTAGCACAGTGACCTCACTCCTTCACCTGCTCCTAAACACTAATGCTACATTCAGAGAATCAATGCAACCATCTACCTTTTTATCGGGCTGCTGGGGTTAGATACTAATGTACAGTGTATATTGCTTATCTAGGGTTTCTATGGCGCTTCAAGGTTTATggtaattgtctttttttttttttttaaacggcaCCTTCTTTACTCTAATGCCAGGTCAAATTTGTATGGATGTTCAATGGGAAACATAATCGCAGGCAGGGTCAACAGCACAAGTTTATCAAGCTCCGAAGTGTTGTCCTCAGTGGAAGATGTGCTTTTTAGTGAAGTGTTCAAAGGCTGTAGGTTTTTCTAGTTTTGAAAAAGGCCACTCTGTTTGGACTGTATACTTCACGTGggtttgtaaacatttttatacGACACAGGTTACTGAAATGTTACGCAAGGTTACTGTGCATTAGATGAAAACGGTGTACTGAGCTTTTTCAAAACAGGAATTATGCACTCCTGCATACGGTGGATGGCATATGCCTGCAAGGATAATGAAATCTGCTCATTTCATTGCTTTCAAAACCACCGACTCATTTAGATTTATTGTTCGTAGTGTGCAATGAACTTTTGTTGCTCTTACTTTGAATCAGGGGAGTAGATTTGCTTcagaaaatataatgcataatgaCTTATTGTAGGAAATCAGCATTATAGTCTCCATAATAGTGCTTATATTAGAAGGGTTCTCATAGCATGGATAAAATGATACCTAATTTGAAAACCTCTGTctatggtatttatttttattcaaccGCTTAATCTGCCCTtcttgtggattttttttttttctttttccccccccaaGGAAAAAAGTGGAAATGTAGAATATTATCCAAGGAGTGCTCTCATGTCTTTGTGTGGTTGAATTGTGGAATGGGATGTCACATCATTAAGGCAACCAAGGGTTGAGCTCAGTATGTCTACATACAATGTTTGGCTTGGTTGTGTTGTTAGTGTGGAATTCGgtacacacagactgacaccgAGTCTTCATTTAGTTGAACTCTTAACATTCCTGTGTTTGCACTGCGTTGAAAAATGAACTTATGTTTAGTTATGTTGGTGGTGGTTTCATTTTCGACTGcgaagttgttgtttttttggggggggtgggggtggagttgttttgtttgatttttgcaGTGCCCCAGATCATGCATTATGGCATGGTTAGTTCCAAAAAAGACCCAATCACAATCATAGTCTTCAGTGAACTAGTCTAGTTTTTAGCCACGATATTTTGCTTGTATCAGAGGTTGCAGACACTTTGAATTTATATTTCCTGGCATACATCTCTGTTTCCTGTAAGAGCACCCTCAAAGCagttttacaataaacaaaactctTGTGTGGTTTAGGTGAATGCCCTCATTTGACACAAACATGAACacctgaattaaaataaacaggccAGATTTCATTATATCCCAGTATAAATTCTGTGTTAACCCCTCACTTTCCTGTATTTCCTCTTTCTAACCAAGTCATTTCATAATTGTCTGGTTAACACCACAGTCGTGCTTTAGGTTGCCATcattaaagaatgaaaagatCTTTATTGGTGGACTGACCATGTTGCATTACCAATCTCTTGACTTCCTTGACCATTTCCATATTCTTGAGCCAGTTGCAGGgtaatttgaaatgttacatAAGAATTCAGACATCCCAGAAACCAGGGCATTAACTTATCTTCAGACACTAAATTGTATATGGGACACAGTTCACCAGCAACCAGtctaacaatgtttttaaaaatggattttaaaaaataaacatctccgTTGATCTGTAATTTCACCAAAGGATGCACAGTCATGAAAGTCACAAACTAGTTCATTTTCTACTTCTAAAGTATGTCTCTTAACCAGCAGTatcttaactttttttaatattatggaGAAATTGTCTCTCTCCCCTATTCTGAATGTGCTGAtgaagacagtttttttttattattcgtttttttttttttttttt

Function

symbol description
cacfd1 Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CACFD1 (calcium channel flower domain containing 1).

NR:

description
PREDICTED: calcium channel flower homolog

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020080 True 3103 mRNA 0.42 5 9137733 9145085

Neighbor

gene id symbol gene type direction distance location
AMCG00020082 NA coding downstream 10665 9115473 ~ 9127068 (-)
AMCG00020077 NA coding downstream 54608 9077740 ~ 9083125 (-)
AMCG00020078 fnbp1 coding downstream 87965 9021823 ~ 9049768 (-)
AMCG00020081 NA coding downstream 171703 8964561 ~ 8966030 (-)
AMCG00020067 NA coding downstream 261470 8854816 ~ 8876263 (-)
AMCG00020083 NA coding upstream 157 9145242 ~ 9148311 (-)
AMCG00020079 inpp5e,LOC105889666 coding upstream 16921 9162006 ~ 9167067 (-)
AMCG00020084 NA coding upstream 24467 9169552 ~ 9193460 (-)
AMCG00020087 NA coding upstream 162824 9307909 ~ 9327357 (-)
AMCG00020088 LOC102213968 coding upstream 255567 9400652 ~ 9444244 (-)
G60774 NA non-coding downstream 120327 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 327840 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 338566 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 341418 8793968 ~ 8796315 (-)
G60656 NA non-coding downstream 1090492 8044609 ~ 8047241 (-)
G60833 NA non-coding upstream 12842 9157927 ~ 9160733 (-)
G60839 NA non-coding upstream 124475 9269560 ~ 9303247 (-)
G60993 NA non-coding upstream 782892 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 940828 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 1058754 10203839 ~ 10205678 (-)
G60746 NA other downstream 297788 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 309624 8812785 ~ 8828109 (-)
G60516 NA other downstream 1575141 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2666299 6467271 ~ 6471434 (-)
G60348 NA other downstream 2671147 6463548 ~ 6466586 (-)
G61170 NA other upstream 1610383 10755468 ~ 10756419 (-)
G61269 NA other upstream 2550606 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2856615 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 3339284 12484369 ~ 12509937 (-)
G61589 NA other upstream 3852753 12997838 ~ 12998223 (-)

Expression


Co-expression Network