AMCG00020081


Basic Information

Item Value
gene id AMCG00020081
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8964561 ~ 8966030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020081
ATGGATAAAATGCACCCTGTACTTATTGACAGCATAAAGCCATTCTTGGATTATTATGAGTATCTGAATGGTGTCTCCTATCGGCAGGCTATTTTCATCTTTCTAAGCAATGCAGGTGGAGAGAAAATCAATGAGGTGGCCTGGCAATTCTGGAAAGAAGGCAAAGAGAGACTAAGCATTCAACTGGAAGACCTGGAGACATCATTGTCCAATGAATTATTCAGTAACAAAAATAgTGGATTTTGGCACACCAGCCTCATTGATAAGAACCTGGTGGACTTCTTCATTCCCTTACTGCCTCTGGAGCATAAACATGTGCAGATGTGTGTATTAGCCGAGATGGAGGAACGCAACTTGAAGCCTGATGAGAAAGTGGTTAACGACATTGTCAGTAATACAACCTATTTCCCAAAGGAAGAGAACATTTTCTCTGTCAAAGGATGCAAAGCTATTGGTGCAAAAATAGATTATTATACCAAGGAAGAAGTGGGGAATGGG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020081 True 498 mRNA 0.41 3 8964561 8966030

Neighbor

gene id symbol gene type direction distance location
AMCG00020067 NA coding downstream 88298 8854816 ~ 8876263 (-)
AMCG00020061 NA coding downstream 638186 8313813 ~ 8326375 (-)
AMCG00020062 NA coding downstream 658609 8302263 ~ 8305952 (-)
AMCG00020058 NA coding downstream 829610 8134181 ~ 8134951 (-)
AMCG00020057 rxra coding downstream 848525 8090305 ~ 8116036 (-)
AMCG00020078 fnbp1 coding upstream 55793 9021823 ~ 9049768 (-)
AMCG00020077 NA coding upstream 111710 9077740 ~ 9083125 (-)
AMCG00020082 NA coding upstream 149443 9115473 ~ 9127068 (-)
AMCG00020080 cacfd1,LOC102799429,LOC106562965 coding upstream 171703 9137733 ~ 9145085 (-)
AMCG00020083 NA coding upstream 179212 9145242 ~ 9148311 (-)
G60730 NA non-coding downstream 154668 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 165394 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 168246 8793968 ~ 8796315 (-)
G60656 NA non-coding downstream 917320 8044609 ~ 8047241 (-)
G60610 NA non-coding downstream 1110188 7853001 ~ 7854373 (-)
G60774 NA non-coding upstream 14243 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 191897 9157927 ~ 9160733 (-)
G60839 NA non-coding upstream 303530 9269560 ~ 9303247 (-)
G60993 NA non-coding upstream 961947 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 1119883 10085913 ~ 10091086 (-)
G60746 NA other downstream 124616 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 136452 8812785 ~ 8828109 (-)
G60516 NA other downstream 1401969 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2493127 6467271 ~ 6471434 (-)
G60348 NA other downstream 2497975 6463548 ~ 6466586 (-)
G61170 NA other upstream 1789438 10755468 ~ 10756419 (-)
G61269 NA other upstream 2729661 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3035670 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 3518339 12484369 ~ 12509937 (-)
G61589 NA other upstream 4031808 12997838 ~ 12998223 (-)

Expression


Co-expression Network