AMCG00020094


Basic Information

Item Value
gene id AMCG00020094
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9542348 ~ 9547581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020094
cacttGCAATTCCAGGTGCCTGCACTGCACATGTACTCTCGCGGTATTTTACGATACCTTACAGTTTGCAAGATGGCGGCTTCCATAGAGGATCTGCTGTTGGAGATTTCTGGTCTGGAAGAGCCACTGGAAGAATTACGCAATTTGAAAACGGCTGTTTTAGCAATCCCCCTGAACATCCTGGGAGAGATCGTGTCCGGTCTGCGTCTGGAAGTCATTTTCTCGCTTTTAAACAGCAATGACAGGGAGcagacagagctgtgtgtgGCCATCCTCATGCGCATCCTGCAAGCCCTGGATCCAGTCAATCTGGTCCAGAACTTCAGGGCAGAACTGCTGAGTGGACTGAAGCACCCGGATGACACTGTCAAAATACTGGCCATGACTCAAATCGGGAGGATTGTTGAACACACAGAGGCTATGACAGAAATCGTGAATAGCCAAGAGCTGTTGAAGGAGGTCATTCACTGTAtcggaggggaaaaaatatctGTTGCGAAAGAGGCCATAAAAACACTTTCCAAAATGGCTCAGACAAAATCAGGATTGGATGCCTTATTTATGAGCAACCTGCAGAAAGACTTAAAGGACGTGATGACCACAGATGATGTGATCCGGTACAGGGTGTATGAGCTTGTCATTGAGATATCATCCGTCTCCCCGGTCTCGCTTGGTTACTGTGCGAACAGCAGCTTTATTTCCAAACTGATCGGAGAGTTAACAGGTGATGACATTCTCGTTCGAGCCACAGCAATTGAGATGGTAACAACACTCGCCCACAGCCAGCATGGAcgacagtaccttgctcaacaAGGCATTGTGGATAAAATCTCAAACATGATCATTGGAGCTGATTCAGACCCATTTTCTGCCTTCTACTTACCAGGGCTGGTGAAGTTCTTTGGAAACCTAGCTATCATGGACAGTCCACAGCAGATCTGCGAGTGCTACCCTGCCTTTGTGACGAAGGTATTTGAAATGGCCACAGGACAGGACACTACGATGATCGGAGTAGCACTGGATACCTTGGGGATACTGGGGTCAAATGTTGAAGGAAAACAAGTTCTGCAGAAAACAGGTGAAAAGTTCCAGCAGGTCTTGAAGAGGATGAGTCAACTGGCAAAGAATGCCGCAACCGAGCTGCGTGTGCGCTCTTTAGAGGCAATTGCTCTCCTCCTCGCTCTACCAGCTGAGGATCAGACAGAGGACCTGCTGGGCTTGACGGAGTCCTGGTTCTCTTCCCTGTCTAATCATCCCATGGAGATGTTAAAGGGCATCAGCACCCAGCCCTTCCCAGAGCTGCACTGCGTTGCTCTGAAGATCTTCACTGCAATCGCTTGCCAGCCCTGGGGTCAGAAAATTATGATTGACACTCCCGGGTTCGTGGAGTTCATTGTTGACCGCTCAACAGGACCCGACAAGGAGTCAAAAGATGCCAAATTTGAACTTGTGAAAGCACTTGTAAATTCCAAATCTACGGCCGAGATCTTTGGGAACCAGCACTACCTGCGTCTCCGGACTTACATGCGTGAAGGACCATATTATGTGACGGCCGTGTCATCTGTCATGGTGGAAGGTGCAGAATAAACATGAAAGACCTCAAAACAAAATGGCGTTCTCATTTCACTGATTCAGTAATGAGAACGATGTATGAAATGATAAATTGGGGgtaaaaaggtgtttttttttctcaaaacattttGCACTAACATTTTGtatgcaatattttatatacattaaaagaaTAGATAAGCCctgagtatatatttttttaattttagatttaattggtatttattaaaacataaactgaatttaaatggtGATCTACAGCAAAGCAAACTCATGTTGCCTTGTAAGTATGAGAGACTTGTTGAAGGACTAGTTTAATGTAACAAAGTAATTTATAGTACAGATTAAAATGGCTTTCTTTATAGGCTACTAGTGTATTTTCACAAAGTAAAAAGTGTTTTGATGTTACTCGTGTGAATTAATCtttattaaaacttttaaaGACAATA

Function

GO: NA

KEGG:

id description
K06692 PSMD5; 26S proteasome non-ATPase regulatory subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020094 True 2021 mRNA 0.44 10 9542348 9547581

Neighbor

gene id symbol gene type direction distance location
AMCG00020093 NA coding downstream 31603 9504386 ~ 9510745 (-)
AMCG00020088 LOC102213968 coding downstream 98104 9400652 ~ 9444244 (-)
AMCG00020087 NA coding downstream 214991 9307909 ~ 9327357 (-)
AMCG00020084 NA coding downstream 348888 9169552 ~ 9193460 (-)
AMCG00020079 inpp5e,LOC105889666 coding downstream 375281 9162006 ~ 9167067 (-)
AMCG00020096 LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502 coding upstream 185402 9732983 ~ 9738219 (-)
AMCG00020097 ppil3 coding upstream 191257 9738838 ~ 9741015 (-)
AMCG00020098 NA coding upstream 233234 9780815 ~ 9783436 (-)
AMCG00020100 NA coding upstream 245225 9792806 ~ 9799158 (-)
AMCG00020106 NA coding upstream 279185 9826766 ~ 9852546 (-)
G60839 NA non-coding downstream 239101 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 381615 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 524942 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 732455 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 743181 8798964 ~ 8799167 (-)
G60993 NA non-coding upstream 380396 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 538332 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 656258 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 958827 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 1149037 10696618 ~ 10698099 (-)
G60746 NA other downstream 702403 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 714239 8812785 ~ 8828109 (-)
G60516 NA other downstream 1979756 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3070914 6467271 ~ 6471434 (-)
G60348 NA other downstream 3075762 6463548 ~ 6466586 (-)
G61170 NA other upstream 1207887 10755468 ~ 10756419 (-)
G61269 NA other upstream 2148110 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2454119 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2936788 12484369 ~ 12509937 (-)
G61589 NA other upstream 3450257 12997838 ~ 12998223 (-)

Expression


Co-expression Network