AMCG00020096 (LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502)


Basic Information

Item Value
gene id AMCG00020096
gene name LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9732983 ~ 9738219 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020096
TGGGAAATGACACGTCACAGCAGCGTCGCGATCTGATGAGGTCATCATGTACACGAACATTGAGACCGTAGCTGGACTTCCACATCCGAATTACTGCATAGTTTGTGGAGTTTTTCTTCTGAAGTTTAATAGCCAATTTACAAAACATGGCAACTGCAGATCCGTGTAAGGTTTCTTCCTTGAAAGGGAAAGTGACACTAATCACAGGAGCCAGCTCAGGAATAGGGGCTGCAACCAGCATTCTGTTTGCCAAGCTAGGAGCACAGCTGGCATTAAACGGGCGAGACGTGGAAAACCTTTCCAAAACAGCCAAGCAGTGCACAGAAAACGGAGGAGCCGAGCCACTGTTAGTACCAGGTGACCTGACAGATGAAGAGACCGTGAAGAAGACTATTGAGAAGACCATCTCTCACTTCGGGAGGCTGGATGTGCTGATAAACAGTGCTGGAATCCTGGCCATGGGAAGCATTGAGACCACGGACATGGTGCAGTATGACCGTGTCATGGACATCAATGtcagGTCCGTCTACCATCTCACTCACCTTGCTGTCCCCCATCTGATCAAATCCAAGGGGTCCATTGTGAACGTGTCCAGTGTGAACGGGCAAAGATCGTTTCCTGGCGTACTAGCCTACTGTATGTCAAAATCGGCCATTGACCAGTTCACAAGGTGCACAGCATTAGAACTGGCTCCTAAGCAAGTGCGTGTGAACTCTGTCTGTCCCGGTGTGATCGTCACTGAAGTGCACAAACGAGCAGGACTGAGTGAAGAACAATACGCCAAGTTTTTAGAGAAATGCAAAGAGACTCACGCTCTGGGACGCCCAGGAGAAGTGGAGGAGGTCACACAGGCCATTGCTTTCCTGGCATCGGATGCAGCTTCGTTCATCACAGGGGTCAACTTACCCGTGGATGGGGGTCGCCATGCCATGTGTCCACGATAATCAACCGGTCCATAATTGTCTTATGGTGCCAATTGCTTCTAGTCACAGTACCCTTTAGAATGAAGTTAGGGGACAATGTCTACCTGATCAGAACATCTGAACCTTCCAAGAACAAGTGCCCCGTTCTCAAATCCACACCTTGTAAAGAACGTGTCTGCTCACCTCAGATTTGTATGAATTGAGATGAACCACAAATATTTAACTAATGTTATGAAAGTAATATTTTGAGTGTGTGATGTCACTAGGTTTAGTCTTTATGATTGCTACCTTCTAAACTAATGTAATACTTAATTCTTCCCTCCTTTGATTCGCTTCTGCAGTGTGTGACATTAGAAAAAATCGCCACCTGGTGGCCACTTCAAGGAACACAGACGATGCGGTTTCAGTCTTTAACTAGGTGGAAAACACctagaaaaataatttagtaaGTTGAATGCAAGCAGTGattaacaaacatctgtatCTGCTTAACAAATCCATTGTACCCAGGTCCCATtgctttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataggtgtGTAGTGATATAGAAGTTGGCCATCTTAGAGCAGTGGGGTTTTGTCCTGTGTCTTTGTACCGAAGAAACAAATGCACCATCTATTTCAATCTGTTCGATATAAATTCACACTGCTATGTGAGATGGGCAATGTATGAGGTTTGCAAGTAATTGGCTTAGCTATGAATTATGTAAGGAATGACACAGGATGAAAATGCGGAATAGAAAATTTAATTGCAGGAGTAAGTGTTAACGAAATGAATCGTAAACATTAAAGCCCAGTTCATTTGCCTaagtttcaaatatttattgaacatCTGAACATTGGTAATGCAAGACAATGGAAAGTATTGGAAATGGTGTATAAGAGAAGACAGGAGAGCTACAGAAACGAATGTGGGTAGAGCATTGACAATCACTGTACTTCCGGTCAGAGAAATGCAATGTTGGcggatgatgtttttttgtggCAGATATTTcagatacagacacagaatttatgtaaaacaaaaataaaacaaaacaaaaaaacatgaatgctaccaggtgtgtgtttaaatgtgagGTATTCTGAGCTCATTTTCTTTACTTGTTTTATCTACTGAATTTTACCATTGACCAAATAGAATAGAACTTTCACATATTCttcatatatttctttaaaaaataaaaaaccatGATAAGTGTAAAAGCATAGAACACAGtcccagtacagtacagttatgATTAtcatatagaaaaaaaaagaataaaacatacaaacaaacaacaaaacaaaacaaaaaaccactgaaatatttttttcttttggagcACCAAATTTACACATAAAATAGCAAAATTAGAATTCTATAAACTCCAACACCAGTTGGGAAACTGATACATAAAgttatcagaaaaataaaataaaataaaaaaaatacaattattaactATTCCCTAACAAAGAAAACCTTACTAGGTCAACATAACCACGTTttcaaaacacttaaataacattaaattagcAGGTAGGGATCCACTGTATACAACAAAGCTTGCacaattatacacattttatttttcaacaacaaaaaaagcttaCTATTAAAACTAAATCTTCACTAAAgtttttttaagatattaatTACAGCTATTGGGGGATTTGTACAAAAGAGCAGAAACTGTTATAAAAAAGACTGCTTTAAAATTCTGTATGGAACCTATGTACGGCAGCATGAGAGATAAATTCAgttcttttttctatttttttaaatttatataaaaatattcccTTAAAAGTATTATAGGcacttaaattaaatgcagttttcaatttaattttcttcagaaTCGCGTGAAAGCaaagttgtaaaaaaaaaaaaaaaaaatcaaaagcctAACACAAAAGCtgcaagtgtttttgtttgttttaaaggttttttttgtagCAGGAGAACAGAGCACCAGATAACTTTCTTGTTAAGGTATTTCCCGAGCACCATATATTGTGAGATGGGAGGTAGACAGTATCAGAAAGCCCCTTCAGGAGTAATTTATAGTAATGTTTTCCTTCCAATAACTAATCTTTACATCAGGAATTTAAAAgtgtatacaaacatacaataatattgggtaatgtgtatatgtttgaCTGCCTTGTGAGTTAAAACCCCACCAGGTTGCAgactaacatttatttaatgagtaATTTATGTAGGTACGAATGGCAGGGCGcaatcaagttaaaaaaaaagtttaatacatttggaTGGATCCAAACATGAAGTTAAAACAGTTCCCCTGAATTGACTGAAAGCTaagaaatgcacaaacaaaagatgaaattaaaaaaatctccttttctattgcactttaacatgatttgtttatataagata

Function

NR:

description
PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase FabG-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020096 True 3345 mRNA 0.37 8 9732983 9738219

Neighbor

gene id symbol gene type direction distance location
AMCG00020094 NA coding downstream 185402 9542348 ~ 9547581 (-)
AMCG00020093 NA coding downstream 222238 9504386 ~ 9510745 (-)
AMCG00020088 LOC102213968 coding downstream 288739 9400652 ~ 9444244 (-)
AMCG00020087 NA coding downstream 405626 9307909 ~ 9327357 (-)
AMCG00020084 NA coding downstream 539523 9169552 ~ 9193460 (-)
AMCG00020097 ppil3 coding upstream 619 9738838 ~ 9741015 (-)
AMCG00020098 NA coding upstream 42596 9780815 ~ 9783436 (-)
AMCG00020100 NA coding upstream 54587 9792806 ~ 9799158 (-)
AMCG00020106 NA coding upstream 88547 9826766 ~ 9852546 (-)
AMCG00020107 NA coding upstream 135230 9873449 ~ 9890563 (-)
G60839 NA non-coding downstream 429736 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 572250 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 715577 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 923090 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 933816 8798964 ~ 8799167 (-)
G60993 NA non-coding upstream 189758 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 347694 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 465620 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 768189 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 958399 10696618 ~ 10698099 (-)
G60746 NA other downstream 893038 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 904874 8812785 ~ 8828109 (-)
G60516 NA other downstream 2170391 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3261549 6467271 ~ 6471434 (-)
G60348 NA other downstream 3266397 6463548 ~ 6466586 (-)
G61170 NA other upstream 1017249 10755468 ~ 10756419 (-)
G61269 NA other upstream 1957472 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2263481 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2746150 12484369 ~ 12509937 (-)
G61589 NA other upstream 3259619 12997838 ~ 12998223 (-)

Expression


Co-expression Network