AMCG00020105 (rpl28,rl28)


Basic Information

Item Value
gene id AMCG00020105
gene name rpl28,rl28
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9784117 ~ 9788052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020105
ATGCTTTCCCGCTGCTCTGTGAAGTACCTTGTGGAACCCAACAATCTCAAGTCCAAGAACTCTTTCCGTTTGAATGGACTCGTTCACAGGAAGACTGTTGGTGTGGAGCCAGCTGCGGACGGAAAGGGGGTGGTTGTAGTCCTTAAGAAACGTGCAGGCCGCTCTGCGCCGTGCCAGTGCCATCCTGAAGAGCCAGAAGCCAGTTGTTGTCAAGAAGAAGCGCACCAGAGCTACGAAGACTGCATAAACTGGCTACTAATATTGTCAATAAACATTTGGTAAACCCACTGAGGCCCTGGTGTCTAAATTTAGAACATGAGAGGTggagtgtatataatatgtaatctACACTTGTATATGAATATTGCCTAAACTTCTGATTTGCTGTGCTGTTTGAGAGAACTGTTCTAACCTCCTCCTCCCTGTGTGTCATTCACTTGGTCTAATTTGGTGAAGAAGAAAAGTAAATCGCTTTTAAAATCAGTTGGCACGTGTGGAggtatataaacattttctggTGGCATATTTAGATTAACTCATAAATACCTGGAGTGGCAGAGAGGAGGTAGATTCCTATCCTAGCTTTGATTTCATTGTTTCTTAAAATCCTATCAAAAGCACAGCTAgcggttttagttttttttttatgtaactaATTTTATTACATATGCTGTGTAGGATGGTCTAATTCATGCAAGATGCTTATTCTGTAAACATGATAAATGGAAAGCTCAGCTTGAATGTgacttttatacatttacagaatCACCTCTTTTTGTCCTCAACCCAGAAACCTTAATGCAGGAGGCAATATATTCGGTCTCTTTCCTGAATTGGTGCAATAGTTCCTTGCCTTGGGCAATAATTACCGACAGATATATGCTAATTGAGTCGAGCTTTGTGAATTAGACTAATTCTTATTGATTCCTTATTAAAACGCCTAAGCTAATCaatgttaattatttgtagtacaatacaaaatgaatggtAATTAACATCTTATAAGGTAAAACAATATAAGCAAA
>TU76237
TGTGAAAAGGCTGAAGTGAACCGGCATCcttcctttccttctctcttctgCCACTGGAAGGTGTGTAACAATGTCTGCTCATCTGCAGTGGATGGTGATCCGTAACTGCTCCAGCTTCCTCCTCAAGAGGAACGGGCAGACCTACAGCACTGAACCCAACAATCTCAAGTCCAAGAACTCTTTCCGTTTGAATGGACTCGTTCACAGGAAGACTGTTGGTGTGGAGCCAGCTGCGGACGGAAAGGGGGTGGTTGTAGTCCTTAAGAAACGTGCAGGCCAGCGCAAACCTGCCACATCTTACGAGAAGATCACCATCAACAAGAACTCGCGTGCAACTCTGAACAGCCTGCGCCACATCATCCGCAAGAACAACTACAGGAAGGACCTCCGCATGGCCGCTCTGCGCCGTGCCAGTGCCATCCTGAAGAGCCAGAAGCCAGTTGTTGTCAAGAAGAAGCGCACCAGAGCTACGAAGACTGCATAAACTGGCTACTAATATTGTCAATAAACATTTGGTAAACCCACTGAGGCCCTGGTGTCTAAATTTAGAACATGAGAGGTggagtgtatataatatgtaatctACACTTGTATATGAATATTGCCTAAACTTCTGATTTGCTGTGCTGTTTGAGAGAACTGTTCTAACCTCCTCCTCCCTGTGTGTCATTCACTTGGTCTAATTTGGTGAAGAAGAAAAGTAAATCGCTTTTAAAATCAGTTGGCACGTGTGGAggtatataaacattttctggTGGCATATTTAGATTAACTCATAAATACCTGGAGTGGCAGAGAGGAGGTAGATTCCTATCCTAGCTTTGATTTCATTGTTTCTTAAAATCCTATCAAAAGCACAGCTAgcggttttagttttttttttatgtaactaATTTTATTACATATGCTGTGTAGGATGGTCTAATTCATGCAAGATGCTTATTCTGTAAACATGATAAATGGAAAGCTCAGCTTGAATGTgacttttatacatttacagaatCACCTCTTTTTGTCCTCAACCCAGAAACCTTAATGCAGGAGGCAATATATTCGGTCTCTTTCCTGAATTGGTGCAATAGTTCCTTGCCTTGGGCAATAATTACCGACAGATATATGCTAATTGAGTCGAGCTTTGTGAATTAGACTAATTCTTATTGATTCCTTATTAAAACGCCTAAGCTAATCaatgttaattatttgtagtacaatacaaaatgaatggtAATTAACATCTTATAAGGTAAAACAATATAAGCAAACATAAAACCTTTATCTGCT

Function

symbol description
rpl28 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL28 (ribosomal protein L28).

NR:

description
60S ribosomal protein L28

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020105 False 1025 mRNA 0.39 3 9784566 9788033
TU76237 True 1281 TUCP 0.41 5 9784117 9788052

Neighbor

gene id symbol gene type direction distance location
AMCG00020104 NA coding upstream 4168 9741757 ~ 9779949 (+)
AMCG00020099 LOC105014073 coding upstream 52067 9691238 ~ 9732050 (+)
AMCG00020095 NA coding upstream 158483 9625089 ~ 9625634 (+)
AMCG00020092 NA coding upstream 241826 9536114 ~ 9542291 (+)
AMCG00020089 NA coding upstream 256579 9526351 ~ 9527538 (+)
AMCG00020101 NA coding downstream 21938 9809990 ~ 9815939 (+)
AMCG00020102 rbm18,LOC107744142 coding downstream 104092 9892144 ~ 9904648 (+)
AMCG00020103 lhx6,LOC106561716,LOC107685129 coding downstream 122183 9910235 ~ 9925271 (+)
AMCG00020109 ndufa8,LOC106561701 coding downstream 155441 9943493 ~ 9947094 (+)
AMCG00020108 NA coding downstream 203578 9991630 ~ 10002494 (+)
G60888 NA non-coding upstream 360558 9423337 ~ 9423559 (+)
G60886 NA non-coding upstream 376100 9407657 ~ 9408017 (+)
G60836 NA non-coding upstream 534303 9249600 ~ 9249814 (+)
G60753 NA non-coding upstream 897661 8886187 ~ 8886456 (+)
G60729 NA non-coding upstream 974248 8807002 ~ 8809869 (+)
G61064 LOC103376870 non-coding downstream 489414 10277466 ~ 10346391 (+)
G61095 NA non-coding downstream 718347 10506399 ~ 10507213 (+)
G61153 LOC103469607,LOC104930867,LOC103356464 non-coding downstream 993714 10781766 ~ 10783898 (+)
G61205 NA non-coding downstream 1220364 11008416 ~ 11011745 (+)
G61249 mvb12b,LOC104934585,LOC105922272,LOC103362447 non-coding downstream 1705574 11493626 ~ 11521381 (+)
AMCG00020053 NA other upstream 1732970 8044275 ~ 8051147 (+)
AMCG00020052 NA other upstream 1899569 7866600 ~ 7884548 (+)
AMCG00020000 NA other upstream 3596228 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 3669921 6106994 ~ 6114196 (+)
G60137 NA other upstream 4422254 5355772 ~ 5361863 (+)
AMCG00020122 urm1 other downstream 692482 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 950450 10738502 ~ 10755375 (+)
AMCG00020134 rabl6 other downstream 1157540 10945592 ~ 10969598 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other downstream 1485972 11274024 ~ 11300032 (+)
AMCG00020171 rpl12 other downstream 2620910 12408962 ~ 12414951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G378923 NA non-coding CI01000187 null 43279 ~ 44041 (-)