AMCG00020106


Basic Information

Item Value
gene id AMCG00020106
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9826766 ~ 9852546 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020106
CGGGACAGCACCGTGCGAGCAGGCTCTAACTCCTCACATGCAAACTTTCGCTTGGGACATAATGCGGTcatgcatgttttatatatgcatgtaagTTAGTTTATTTCTTCTGCACTAACACTTGGTTTGAGAAGGTAAAACCCCTGACCAGAGGAGATACAACGTGTGGATTACCTTAAAATGAGTGTGCTGTCTATTTCTTCactcctgctgctgctctgtgttgCCTCGCAGGGAGCTGATGTGACGGACAACGACAGGATCACAAATCCTTGTTGCTTTTACCCTTGCCAAcactggggagtttgtgtgCGATATGGCTTAGACAAATATGAATGTGATTGTATTCGGACTGGCTACTATGGAGTGAATTGCACAATTCCCGAGTTTTGGACAAGAGTCCACGAATTCCTGAAGCCAAGCCCTGATATGGTTCATCACATATTGACCAATTTCAAGTGGCTATGGGATATCATCAACAAGACCTTCATCAGGGATAGACTCATGCGTCTTGTTCTGACAGTGAGAGCTAACCTGATACCAAGCCCTCCAACCTTTAACTCGAAATATGGCTACATCAGCTGGGAGGCCTATTCCAATGTCACCTACTTCACTCGCATCCTCCCCCCGGTGCCTGAAGACTGCCCAACACCAATGGGAACCAAAGGCAAAGCTAAACTTCCAGATTCAAGAGTTCTGGTTGAGAAGTTCCTACTGAGAAGGAAATTTATTCCCGATCCCCAAGGAACCAACCTGATGTTTGCCTTCTTTGCACAGCACTTCACACACCAGTTCTTTAAAACACATAATCGGATGGGCCTAGGATTTACTAAGGCTCTGGGCCATGGGCTGATCAATGGTGAGGTGTACCCGCCAAGCATGACGGAGGCTCAGGTCATCATGAGTTATCCCTCAAGCGTGCCCACGGAAAAGCGTATGGCCATTGGGCAGGAGGTGTTTGGGCTGTTGCCTGGCCTCGTGATGTATGCCACTCTTTGGCTGCGGGAGCACAACCGCGTGTGTGACATCCTGAAGGAGGAGCATCCCACCTGGGGAGACGAGCAACTGTTTCAGACGGCCCGCCTAATCATCATCGGTGAGACGATCAAGATTGTGATTGAAGATTATGTCCAGCATCTGAGTGGCTACTTTTTGAAGCTGAAGTTCGACCCAGAGCTCCTCTTTGGTGTCCAGTTCCAGTACAGAAACCGGATTGCTGTGGAGTTCAACCAGTTATATCACTGGCACCCTCTGATGCCAGATAGCTTCCTCATCAAAGGAGATGATATCCCCTACCAAAACTTTATCTTCAACACTTCAGTCCTCTTGAAATACGATATTGAAACACTGGTTGAATCCTTTTCTATACAACGGGCTGGCCAGatAGGAGGAGGGCGCAACATACACCCTGTAGTGCAGAAGGTGGCGATCGGGGTCATTGAAGAGTCCAGACATTTGAGGCTGCAGCCTTTTAACGAATACCGGAAGAGGTTCAACCTGAAGCCCTACAAATCATTTTCAGACTTCACAGGTGACGTGGAAGTTGCAAAAGAACTGGAGGAGCTGTACGGACATATCGATGCACTGGAATTTTATCCCGGCCTGCTGCTAGAACATACTCGACCCAATGCTATATTCGGCGAGAGCATGGTGGAAATAGGAGCTCCCTTTTCTCTTAAAGGCCTTCTGGGTAATCCTATTTGTTCTCCAGAGTACTGGAAACCAAGTACCTTTGGAGGGCAGACCGGTTTCAATATTGTGAACACCGCCAGCCTTAAGAAACTGGTTTGCTTGAACACAAAAAGGTGTCCGTATGTTGCATTTCATATTCCCAATGTGGATTCTAACGATGACGGGAATGTAAAGAAACCGTCTTCGGAGCTGTAAACCGGAGTTAGTTTTCATTTGGTTTATAGATGAAAATGCCATTGGACAAGTCAGTTAGATACAGtaagaaataaaagaatgaaagaaaaaagcaaattaattataAGAACAGATAAGAAATGATATTAATGAAGACACTGCCTTAGGAAGATGCTGTATTTCTAAAGAAGAGTGTGTCACATGAgcagtacttttatttttaaacactggaatttcctttttttaacctagtttctgtctttttgatgttttgtgaaaaaaaaaaaagaacattcaaATATTTCTCCCTTTGCTCTGTCTATAGTGTGCCATCTGTATCTCTTGAACAGTCAAAACACTTGTGTGATATTGCTTTCTTTCCAGCACAATCTGCTTCTTGGTCATGGGCCATGCATGATGTCTAACCAATATTACACAGTGTTTTAATGTTGAATGCTAAACTACCTCAGTGTTGAAGTATACAAGAGCATCAGAATCTATCAGTGGAATTagttttatgattttaatagTTACAACTGACACACAATTGCTGTTTCCTCCCTCAAACTCCCTCGGATTAAAAAGCTGCTactggtaaatgtattttatagacCTAAATAGCTACACAATACACTTGACAGGCACCAACTAAAAGTTAATCAAAAATCGGCTGCCATACTGATATTACGAAtcaaaaaatttaaaacattacttGTAAAACTCACTTATGTTCCacagatcatttttatttataaaattgtaaGAAAGGGTGCAAATGAGTGGAGGCTCTTGGGCCTAAATTTCAATATTGTTCAATTAATTGTAACTGTTAGTAGTAGCAGAACCACACCATAATTTCATGAGTTTTTAGTTTGTCATTTGCAGGGAATTCTAAGAATCAGCGTCATCTATCTGGCTAAGTAGTACATCTCCATGACTTTTGGTGTAAAGAAGTGCTGCTTATATTCAGACCTAAAAGTCTGGGTTTTTGCCTACATCTGTTGACTTACCAATGTTATGTAGGTTTGACTAAAGGCATTTGTGGACCATATTAgcaagtgtgtatgtatgtaataatgTATCCACACCAAGAATACAGCACTATggagtgtgtgtgctttttgtttgcAAACCGTGATTTTATTTCACCTATCttgtacatttgtaatgcttgtaatgttttaaattgtactgcATTTTTGGGTATCCATTCtttcaatctatttttttttttatctttccaTCTTCCTCCAcacttttatttccaaaatgaatTAAGTTTTTCTGAAGGTACATGGTTTTGACTTTGTGTCCTTTGATTTCCCTATTGGGCTTCTCATTTTTAGTGTTCCTCTCTTATGGGTTTTAACTGTCATGGTATTGTTGCTCTGATGTAGGGAAGGCAGGAGAGAATAGCCTGAATGCTGGATATTATTCTCAAAGTATGAAGGATATTAAAAGTGGAATCAAACTAAAAAgcagtgtttatatttttgtttcctttttaaatgtagcttTCATGTTTTTACAGGAAGGGGTGTGTTTTGACTTGTTACTGTTTGTAATGaacaattataaattaataaataaattaaagtctaCATAAAAGgaacatacacattttactgCAGATGAAAACaagcttattttaattttgtttatttgtgttaagATGGTTTTTGGAATAATTTTAAAGTATTCAGATTCCCAACTAAATGCAGTactttatattataatacaacCATCCCATTTTGAAGaaactttgaattattttgtgcataTCCTGTTAGTTTTGAGAGTGGTAAAGAATATTGTACTGATAGTAGTGTCAAGTCAGTGATCTTAGGAGTGTGATAAACCAACCatagacacaaaatacattctaCAGTTTTACAATGGGAAAGCATAGTGGTCGTTAGGATTTTCTTTATACCTTTATTAAcacacttacatttttaatttagaagcagctagaatatattttcattccACACAAGTTTTCCTGAAATTTACTTaaatttgtacacattttataatattataaacatgGAGAtgtttaagtaaaaataaaccgataacatttttttcaaaacatttgaacaatacattctaaatttgtaaaacaaatacatagtcTATAATAAgcacacactgaaatacagtaTACGTAACACAATGGATATGAAACTACTTTCTGATCCAAACGTAAGAGGTATTTCTGTTTTAAGTTTAGTCTCAGAACTCAGAGGGCGCAGAACACAAATTATTAGATGTAATGAATctattaatatttacaaatgtgttgtttacatggggggggggaatccaTACTACAAATATTCAGtgaaagaaaagggagagacCAATGTTTTCATATTCCATTAAGGCCACAGAAAAAGCTGTGTAGTTTCCCTGCTATTGTAATGCCATTATCATACACAACTTGGATAAAGCACAGTTTAGCCTGTTTGCAGTCAACGTTATAAAAGTTATACAATAAAGTAGAAAAAACAGGGCAACCATGTGAAAACTTCTAGGGTGCCAGTAGTACGTTTtacaggaaaacaggaaaatggCATTGTAAGATAATAAAAATCAACTTGTGATTAGTGAGAGGCGtgtagtataaaataatattgctcAAGACTATGCTGTGCTTTGATatctttgtttacatttctaaaacaaaagaaaggagCAATTACTGAAATTCTTTCTGTCCAAGAAGCACTCACAGTAGACTGGATTAATAATTACTCAGTCCCAATTGGCACAGTCACATTCCCATTTTCTGTTAAAGCAAACTGTTACTCAGATATTACTATGGTAACAATTTATGACAGATTACCCCCTAAACAAATCTGGAGGAATGATTCTCTGGCATGTGATATGTCACACGTTTCATAGTGGGTGCTTAAACCAGTGTTAtgaatacttatgtattttagaaaaatgGTTATGAATGGTTAAGATTATGAATGTCCTGTGGTGGTGTTATATAGTCTTTATGAAGGCTACATTGAGAGGCGTTCGAATGAAGGTGCTCATTaatgctatttttattgtatttttttataatgctgACCTTACACTAAAGATTGtatgcccccccccacccccccatccccattGTGCCTCAGTCCAGTTTTGGAGAGGTTATGGACAGGAAATGTGGCGATTTGGGAAGATGAACCATTCTCCATATATTGGGAGAAATTGTACACCAACAAAATGTGTCCTGACTTATGAACTCTGTCCTTCGAACCAAATCCCTCTGCTCATATTTGAAGACGCTCTAAAAGGAGGTCACCTCGTCACTGCCTCTGTCTGATTTAACAGTTTGCTTGCACAGTATTTCACATACATAAACAGGTGAATCCAAGCTGTCTTCGTGAGAATTTGCAATAGTATAACTATATGATTTTCTCTCATGCAAAGCTATTCATGACAGTGTATTACATATCACACAGTTATATACAAGgagagcattttttttcttattagtCCTCTGTTCCTAAAGGGATGAAAATTGAAATGATCAAGTGCAGTAAGAATCCAATAACTGAAGGCAAAGTACTtttgaataatgataataatgaactGTTATATATTTAAGTCATGTGTTACAAGTTTGAGGTATTATTTCTCATTTGGGCTGCCAACAGTATATTGACTTTTGTGCCTAAACtgaatgtaaacattttgttttaagagaaCGGTGAACTGTGGTATTTTTCATTGATTGTCTtcagaaataaagaacatttgACTTTTGA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0001822 kidney development biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0001570 vasculogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0004666 prostaglandin-endoperoxide synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00509 PTGS1, COX1; prostaglandin-endoperoxide synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020106 True 5642 mRNA 0.38 10 9826766 9852546

Neighbor

gene id symbol gene type direction distance location
AMCG00020100 NA coding downstream 27608 9792806 ~ 9799158 (-)
AMCG00020098 NA coding downstream 43330 9780815 ~ 9783436 (-)
AMCG00020097 ppil3 coding downstream 85751 9738838 ~ 9741015 (-)
AMCG00020096 LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502 coding downstream 88547 9732983 ~ 9738219 (-)
AMCG00020094 NA coding downstream 279185 9542348 ~ 9547581 (-)
AMCG00020107 NA coding upstream 20903 9873449 ~ 9890563 (-)
AMCG00020112 NA coding upstream 79204 9931750 ~ 9943076 (-)
AMCG00020117 strbp,LOC107686417,LOC107713322,LOC107685126 coding upstream 374948 10227494 ~ 10261824 (-)
AMCG00020123 NA coding upstream 685736 10538282 ~ 10540365 (-)
AMCG00020125 NA coding upstream 692239 10544785 ~ 10550796 (-)
G60839 NA non-coding downstream 523519 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 666033 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 809360 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 1016873 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 1027599 8798964 ~ 8799167 (-)
G60993 NA non-coding upstream 75431 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 233367 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 351293 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 653862 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 844072 10696618 ~ 10698099 (-)
G60746 NA other downstream 986821 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 998657 8812785 ~ 8828109 (-)
G60516 NA other downstream 2264174 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3355332 6467271 ~ 6471434 (-)
G60348 NA other downstream 3360180 6463548 ~ 6466586 (-)
G61170 NA other upstream 902922 10755468 ~ 10756419 (-)
G61269 NA other upstream 1843145 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2149154 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2631823 12484369 ~ 12509937 (-)
G61589 NA other upstream 3145292 12997838 ~ 12998223 (-)

Expression


Co-expression Network