AMCG00020107


Basic Information

Item Value
gene id AMCG00020107
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9873449 ~ 9890563 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020107
GATGTACTGGGATGTACCGTTCTTCAGCCTGTTTTCGGACATGCTTTGAGAGGACATTTCAGTTGCATTGTGGGGTGTGACACAGTGATGGCACTAAGTCGTGTTGGCCTGCTGCGGCCAGTGCTGGGCAGATCCCTGCCGATTCTCGCGAGGTCGCCGCTGCAGCCCAGCGTGGGCCGCTCTGCCCTCCTCCAGTACGGCTGCCGGCAGTGTGAGGCCCTTTTCTCGGCTCAGAGCAGGCTTTATGCAACCAAGAAAAGCAAAGCTAAAGGGAAAGGCCAGGCTAAAGTGAGTATCAATGCAGCACTTGTGGAAGATATCATTAATCTGGAGGAGTTGAAAGACGAGATGAACACAGTGATGGAGAACCTCAAGCAAGATTACAGCAGGCACTTAAACATCCGCTCTTCAGTCGGTACATTAGACCACATTTCAGTGAGCACAAACGATGGGAAGTTTCCATTAAACCAGCTCGGGCAGATTTCCATGAAGTCTCCTCAGCTCATCCTAGTAAATATGACCAGCACCCCAGAGGCTACAGCAGCCGCCGCGAAAGCCCTCCGAGACAGCGGCATGAACCTAAACCCCGAGGTGGATGGGACCATGATCAGGGTGCCAATTCCTAAAGTAACAAGGGAGCACAGGGAAAACCTGGCCAAGCTTGCAAAGCAGTTCAACAACAAGGCAAAGGAGTCCCTGAGGAGAGTCAGAGCCAACGCGGTGAATCAGGTGAAGAAATCGAAGGACGACGTTTCAGAAGATACCATCAGGTTAATAGAAACTCAGATTCAGCAAATGGCAGATGGTGTTGCAGCTGACATGGACAAACAACTTGCAACAAAAACCAAGGATCTTTTGGGATGAGAGTAACGGGAGCTGTtctgatttgttgttttcttctgtgtaaGGGTCTACAGAAACAATCCTGTTCGTATATAGCCCCGCAAGTCTGAGCtggagtgaaataaaaaaaatataataatttaaaaaataatctctgcACGTTGATAATTTGTGTCTCCAAAAACTGTTTGAGCAAGCGCCATAAAGCCATTatagagtatttatgtatttcactCAGGCATAGACAAATCTTGGCATAGCACTTTATTGCTTGCTGGCTAATTTCTCTACACATTTTCAAGCAAGCAActaaaaaaactatacatttttttttatatgtgatttTGGTCctccttttaattaaaaccaaaaccacaAATATTGTTGACTTTTACATGTGCCACATTTACTGTAAACAGCTTGGTAAGGGCGTTGGGGCTTTAAAAGTGTCAAGATTATCACCAGCATTTGATTGCCATTCTATTGAATGGATTTTGCTCATTTAACCAGTCTCCCCCACCAGCATTAAGGAGTTCTACTAAAACTaccaaaataaagtaaaactaaaGCAATATTTATGTTCAGTTTGTTCTAGAGAGCTCTCACCTCATatatgtttctttaaattattgaatttcATTTCCAAAAGTTTTTACACCCACTTTATTTGCCCCTCTTACTTTGATATGCAGTCTATGCATGAGCACAGGGGGAAGAGTGTCTTCTGATCTGTCTCTCTTCATCTGGAAAACCTGATGACTGAAATGTTGCCAGACAGTGCAATCTGCATTCAAGAAAGATGAATGCCCTAAACTGCAGGATAGAATACAGATTTGCATATGGCCcgatttgcctttttttttttaatctgttaccAACGTCCTAAAATCAGTTTCGACAGCAGGGCGCTCACTGTCTAGTATTATTTTGCTTCATACACACTGACACCTAGCAAACTGTCACCTGGTTATGCCAAGAGAACGTCTTGCAAGCTGTTTCCCATCCTATTGGGTTTGACAGTTTGGGAATTGAGTGTCTGCAGTTTGGGAATGCTGAATTTAAATCAGATCGGGTTGGATGTCGAGACCAGAGGTGACTCATCCATATTCAATCCTTGATTTAGTGGTTTGGTTAAAGCGTTGAAAGGAAATTTGAATTGGGCAATCCGTTTGAGGAGAAAAAGTTAGTGGAAGAAACGGCGCTGGGTGGACTGACGTGTGATCATAGTGTTGGATGATACTTAATAGAGGTTTTTATCTGGAATGCTAGACTTGGAGTATTAAAATGCTTGGAATATGAAACATTATCAACATGTTATGCAAACAGTCTGAAATCACATGGGTGTCTCTGGCCACAGTTGAACTGATATCAGCAGTAGTTTGGGGATTTCAGTGTGAGTGGTTTAATTCATATGCCCCGACACAAAACTGTAATCCCAGTATTAAAGCTATCTCCTCATAAGAAGGAATCCTCTTCaataaacaaaggaaataacACATTATGTAGGACCTCCTATCTaaggcattgtttttaatggatgaaaatacaatgtggtctttaaataaacaaaagtttatttcatctACAGACAag

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K02838 frr, MRRF, RRF; ribosome recycling factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020107 True 2436 mRNA 0.42 7 9873449 9890563

Neighbor

gene id symbol gene type direction distance location
AMCG00020106 NA coding downstream 20903 9826766 ~ 9852546 (-)
AMCG00020100 NA coding downstream 74291 9792806 ~ 9799158 (-)
AMCG00020098 NA coding downstream 90013 9780815 ~ 9783436 (-)
AMCG00020097 ppil3 coding downstream 132434 9738838 ~ 9741015 (-)
AMCG00020096 LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502 coding downstream 135230 9732983 ~ 9738219 (-)
AMCG00020112 NA coding upstream 41187 9931750 ~ 9943076 (-)
AMCG00020117 strbp,LOC107686417,LOC107713322,LOC107685126 coding upstream 336931 10227494 ~ 10261824 (-)
AMCG00020123 NA coding upstream 647719 10538282 ~ 10540365 (-)
AMCG00020125 NA coding upstream 654222 10544785 ~ 10550796 (-)
AMCG00020124 NA coding upstream 740729 10631292 ~ 10647839 (-)
G60839 NA non-coding downstream 570202 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 712716 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 856043 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 1063556 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 1074282 8798964 ~ 8799167 (-)
G60993 NA non-coding upstream 37414 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 195350 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 313276 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 615845 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 806055 10696618 ~ 10698099 (-)
G60746 NA other downstream 1033504 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 1045340 8812785 ~ 8828109 (-)
G60516 NA other downstream 2310857 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3402015 6467271 ~ 6471434 (-)
G60348 NA other downstream 3406863 6463548 ~ 6466586 (-)
G61170 NA other upstream 864905 10755468 ~ 10756419 (-)
G61269 NA other upstream 1805128 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2111137 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2593806 12484369 ~ 12509937 (-)
G61589 NA other upstream 3107275 12997838 ~ 12998223 (-)

Expression


Co-expression Network