AMCG00020117 (strbp,LOC107686417,LOC107713322,LOC107685126)


Basic Information

Item Value
gene id AMCG00020117
gene name strbp,LOC107686417,LOC107713322,LOC107685126
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10227494 ~ 10261824 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020117
TTCATTCATGGCTGTTCTCTTCTACCTCACCAGGTGACTTTCTCCAGGAAGCTTCCCGACGAGACTCCTCTTTACTATTTTAATATCCCAGCTGTCAGGGAAATTTGAGGGGAGCTTATGAAGAAGTTGTGTCTGGGGAAGCAGCGCCTTGTGAAGACCACTCTGAGCGAGACCCAGAGATCAGAGGgcgaggaggaagaggaggcagaaGGCACTCTGTCGCAGCCCAGCGCACAAGCATGGAGCACCCCCAGGGCTAATCCAGACCTGCCTGTGGGAAAGTGGTGTGTGTTTGATAGATCTATTCGATCCTTTGCTAACGATGATCGCCATGTTATGGCAAAGCACTCCACAATCTACCCGTCCTCTGAAGAGCTTGAGGCCGTCCAGAATCTGGTGTCCACTGTGGAATGTGCATTGAAACATGTCTCGGACTGGATGGATGAGGCCAACAACCCAGCAGAAGAAGCAGAGGATGTTAAGAAGGAGGAGTGTGCAGAAAACAGCACAAAGGAGCAGAGCTGTGGGGTCCTGTGTGGTGTAATGAGAATTGGGCTGGTTGCTAAGGGTTTGCTGATAAAGGAAGATATGGACCTCGCGCTGGTACTCATGTGCAGAGAGAAACCCACTGAGACCTTATTATGTACAGTCTGCGACAACCTTCCTCTACAGATCCAGAAACTTACAGAAGACAAATATGAAGTGGAGAAATGCATAGAAGAAGCTGCGATTTTGGTCTGCAATACTAAGGAACCTAAGTTAACACTGAAGGTGGTACTCACCTCCCTTCAAATGAGAGACGATCTGGACAAGAAAGATGAAGTAGAAAATGTTGCGATGAAAGATCCACCGGACTTACTGGACAGGCAGAAATGCCTAAACGCCTTGGCGTCTCTGCGACATGCCAAATGGTTTCAGgCCAGAGTTAATGGATTAAAATCGTGCGTAATAGTTCTCCGTATTCTCCGTGATTTGTGCAACAGAGTGCCCGCTTGGGAGCCATTAAAAGGATGGCCTCTTGAGCTTATCTGTGAGAAGGCCATAGCCACATGTAACCGGCCTCTCGGAGCTGGGGAAGCTCTTCGTCGGGTGATGGAGTGCTTGGCCTCTGGAATCCTGCTCCCAGgtggACCAGGATTACACGATCCTTGTGAAAAAGAGCCTACAAATACCCTATCCAATATGACAGACAAGCAGGGAGAAGATATCACATACAATGCACAGcatGCATTGCGGCTATTAGCCTTTGGGCAGATCTACAAGGTACTAGAGATGGACCCACTTCCTTTGAGTAAACCATCGCAGAAATATTCCTGGTCAGACAAAGAAgGAACAAGTCTGAAAAGACCCTATGAAGACGGGTCATTGGAAGAcaaagaattaattaaaaagatgaaGCGCAACTTGAGAAAAAttCTGGACAGCAAAGCAATAGATAGCAACCAGCCAATGAACGCTCTCATGAGACTTAACCAAATCCGACCCGGGCTCCAATACAAGCTCCTGTCACAGTCTGGGCCTGTTCACGCACCTGTCTTCACGATGTCTGTAGATGTGGATGGCACAATATATGAAGCCTCAGGGTCATCAAAGAAAACAGCCAAACTCCACGTAGCAGTGAAGGTTTTGCAGGCCATGGGCTACCCAACTGGTTTTGACACAGATCTGGACTCCATGAGTGCGGATGAAAAATCAGATGGCGAGGGGAAGAGCGAGACGGTGTCTACGAACTCGAGCAATAATACAGCAAACTCCACCACAGACAGCTCCAACACACTGGAGGTACGAACTCAGGGTCCTATTCTTACTGCCAGTGGCAAAAACCCGGTCATGGAGCTGAACGAGAAACGGCGAGGGCTGAAGTACGAGCTAATATCAGAAAGCGGGGGCAGCCACGACAAGCGCTTTGTCATGGAGGTGGAGGTGGACGGACAGAAATTCCGAGGGGCAGGACCCAATAAGAAGGTGGCCAAGGCCAGCGCAGCTCTGGCGGCTCTGGAGAAGCTGTTTTCAGGGCCCAATGCAGCCGgcaacaagaagaagaaggtcaTTCCTCAGACTAAAGGGGCAGTGGTGACGGCTGCATCAGTAGCCGCTCAGGCGGTGAGGGGCAGAGGAAGAGCAGCTCTTACCAGAGGGGCGTTTGTCAGTGCTGCTACTGCACCAGGATACGTCACGCCAGGCTACGGGACACCATACGGCTACAGCGCCGCGGCGGCCACGCCTGCCTACGGTTTGCCCAAGAGAATGCTTCTGTTACCAGTCATGAAATTCCCAGCATATCCTGTTCCCCACTACTCATTCTTTTAGCACAATGCCCGAATCAAATTCACTTCGATCCaacataaaactgtaaaaaaaaaatataaaaaaaaaaattgaagggattattttattttcctttttctttttttcctttttcaactCCACATTTTCTTGGGAATATGTACTTGAGCAGCAGATCATTTGTAAAGTGCTTTCATTTTCTAACGACTTTTCACTTTTACAGATAAAACTGCAGGTTAAGTTCTTTAAAACTTGAAGGATGCGTACTGTGAAATGTTACCTCATTCTCAGAGTATAAATTATAccagcctttttattttattttattttattttgtttttgtttgttgttgttattgtaggaaagatttacaaaaaaatgaaacttacACAAACCTCACAATATTCTGTAAAAGTGACTCAATCTGTGAAGGATGTATAGAGAATTATAAACCGCAGATCaccaataaaacatgttctCTTACAACAGCTGAGTACTGCCTggtttataattttatatggATAAAACTAGAATCAAGGAGATTTGAGTGCTTGGacacttaaatatttttttgcattatttatagttCTAATCCCATATAATTGTGACACAATCTTAAA

Function

symbol description
strbp Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to act upstream of or within cell differentiation and spermatogenesis. Is expressed in heart tube; nervous system; neural tube; notochord; and pharyngeal arch 3-7 skeleton. Orthologous to human STRBP (spermatid perinuclear RNA binding protein).

NR:

description
spermatid perinuclear RNA-binding protein isoform X4

GO: NA

KEGG:

id description
K13200 STRBP; spermatid perinuclear RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020117 True 2906 mRNA 0.46 18 10227494 10261824

Neighbor

gene id symbol gene type direction distance location
AMCG00020112 NA coding downstream 284418 9931750 ~ 9943076 (-)
AMCG00020107 NA coding downstream 336931 9873449 ~ 9890563 (-)
AMCG00020106 NA coding downstream 374948 9826766 ~ 9852546 (-)
AMCG00020100 NA coding downstream 428336 9792806 ~ 9799158 (-)
AMCG00020098 NA coding downstream 444058 9780815 ~ 9783436 (-)
AMCG00020123 NA coding upstream 276458 10538282 ~ 10540365 (-)
AMCG00020125 NA coding upstream 282961 10544785 ~ 10550796 (-)
AMCG00020124 NA coding upstream 369468 10631292 ~ 10647839 (-)
AMCG00020132 NA coding upstream 443151 10704975 ~ 10727531 (-)
AMCG00020133 NA coding upstream 511872 10773696 ~ 10779387 (-)
G61052 NA non-coding downstream 21816 10203839 ~ 10205678 (-)
G61027 NA non-coding downstream 136408 10085913 ~ 10091086 (-)
G60993 NA non-coding downstream 298628 9927977 ~ 9928866 (-)
G60839 NA non-coding downstream 924247 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 1066761 9157927 ~ 9160733 (-)
G61098 NA non-coding upstream 244584 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 434794 10696618 ~ 10698099 (-)
G61137 NA non-coding upstream 436305 10698129 ~ 10700883 (-)
G61200 NA non-coding upstream 699312 10961136 ~ 10961434 (-)
G61201 NA non-coding upstream 700487 10962311 ~ 10962510 (-)
G60746 NA other downstream 1387549 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 1399385 8812785 ~ 8828109 (-)
G60516 NA other downstream 2664902 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3756060 6467271 ~ 6471434 (-)
G60348 NA other downstream 3760908 6463548 ~ 6466586 (-)
G61170 NA other upstream 493644 10755468 ~ 10756419 (-)
G61269 NA other upstream 1433867 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 1739876 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2222545 12484369 ~ 12509937 (-)
G61589 NA other upstream 2736014 12997838 ~ 12998223 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location