AMCG00020123


Basic Information

Item Value
gene id AMCG00020123
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10538282 ~ 10540365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020123
CAGAAACGTCGCCCACGAATTACGTCACAGTGATGCGACCGGCTTCGACGGAGTCGGAGGTTAAAGATGTCATGACTGATCTGACTCATGTGTGTGTCATTCATGTTGCAGCGTGTGTTGCAACCTTTAACAAGGCTGTTTCGTGGTATCCTGTCATTCAGCATGAGACGTTGGGTAACCAGTATTATTAATCGCGTTTTACTGTATGAACCTCTTTCACTTAAAATGAGCACCGACGTGCCTCAAAACCATAAAATGCGCCAGAAAATGGTTGTCGGTCTGGGCAACCCTGGCATGAGCGGGACGCGGCACAGCGTTGGCATGGCGGCTCTGGCTGCCCTGGCTGGCAGGCTGGGGGTGGCAGAGCTCTGGCGGGGGGACAGGCAGGTGTCGGGGGAGGTGGTCCTGTCAGAGCTGGGGGAGACCCGACTGGTACTGCTCAGACCTAGACTCCTCATGAACATCAATGGGGTCAGTGTGGCCAAGGCTGcTGCCAAGTTTCACATACAGCCAGAAGATATTTACCTCCTACACGACGAGCTGGACAAGCCTCTTGGAAAAGTCTCTATGAAGCAGGGAGGCAGTGCTAGGGGTCACAATGGGGTGCGTTCTTGTGTAGAGTGTCTGAAAACTGACGTAATGCCACGGGTGAGGATTGGCATCAGCCGGCCTGCAGGGAAGGTTTCTGTGGAGCGCTATGTCCTGGGCAGGTTTACCAGAGAGGAGCAGGAAGTGCTGAGGGAGGTGCTGGAGCAGAGCGTGGAGCTGCTGCTCAGACACATCATAGACAGTGGAactgacacagcactgcagcacaCAAAAGTGCCACCAGGCGGCAGGGCTGCAGAGAAAACATGAGTTTGGACTGGACTGATGAAATGTATCAATTGTGCTACAGTTATGGCATGTGGACTCAAAAGCGGAATGAAGCAGCGCCACCAGCCATCCAGGAAAAGTAATGGTGCACCGGACAAGAGAGATTTTAAGATGGATTAGTGGTTTTGCTGTGATACCAGATTGAAGGTAGCAGAATAAGCATGTGGCAGCCATGCATTTAGGTATTTTAAAAGGATGATGTGCAGAAAGTCTTATGCTGATTAAAATGGACTGGGTGGCTTTGGATATGGTGctctattgaatatgtatttttataaagcCACATTTCAATTGTATACCTCTAcagtttgtaatttttgtacttttgtcaTATTTCCTcatctgtaaaaatacaaacctaTTTGTAAAGGGTGTGAACTTTTTCTGTGTGTACCTATAATCAGGTTAGAGTAGGAGCTATGTCAAGAATTGTGCTTTTaggtgtgtttttattctgttcctGTTTATAAATATCAAATGTGCAAATATTATACTGGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K01056 PTH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020123 True 1375 mRNA 0.48 5 10538282 10540365

Neighbor

gene id symbol gene type direction distance location
AMCG00020117 strbp,LOC107686417,LOC107713322,LOC107685126 coding downstream 276458 10227494 ~ 10261824 (-)
AMCG00020112 NA coding downstream 595206 9931750 ~ 9943076 (-)
AMCG00020107 NA coding downstream 647719 9873449 ~ 9890563 (-)
AMCG00020106 NA coding downstream 685736 9826766 ~ 9852546 (-)
AMCG00020100 NA coding downstream 739124 9792806 ~ 9799158 (-)
AMCG00020125 NA coding upstream 4420 10544785 ~ 10550796 (-)
AMCG00020124 NA coding upstream 90927 10631292 ~ 10647839 (-)
AMCG00020132 NA coding upstream 164610 10704975 ~ 10727531 (-)
AMCG00020133 NA coding upstream 233331 10773696 ~ 10779387 (-)
AMCG00020136 NA coding upstream 242999 10783364 ~ 10816925 (-)
G61098 NA non-coding downstream 30645 10506408 ~ 10507637 (-)
G61052 NA non-coding downstream 332604 10203839 ~ 10205678 (-)
G61027 NA non-coding downstream 447196 10085913 ~ 10091086 (-)
G60993 NA non-coding downstream 609416 9927977 ~ 9928866 (-)
G60839 NA non-coding downstream 1235035 9269560 ~ 9303247 (-)
G61136 NA non-coding upstream 156253 10696618 ~ 10698099 (-)
G61137 NA non-coding upstream 157764 10698129 ~ 10700883 (-)
G61200 NA non-coding upstream 420771 10961136 ~ 10961434 (-)
G61201 NA non-coding upstream 421946 10962311 ~ 10962510 (-)
G61203 NA non-coding upstream 426815 10967180 ~ 10969599 (-)
G60746 NA other downstream 1698337 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 1710173 8812785 ~ 8828109 (-)
G60516 NA other downstream 2975690 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 4066848 6467271 ~ 6471434 (-)
G60348 NA other downstream 4071696 6463548 ~ 6466586 (-)
G61170 NA other upstream 215103 10755468 ~ 10756419 (-)
G61269 NA other upstream 1155326 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 1461335 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 1944004 12484369 ~ 12509937 (-)
G61589 NA other upstream 2457473 12997838 ~ 12998223 (-)

Expression


Co-expression Network