AMCG00020135 (LOC103036375,LOC107681247,LOC108423724,LOC102294584,LOC107560229)


Basic Information

Item Value
gene id AMCG00020135
gene name LOC103036375,LOC107681247,LOC108423724,LOC102294584,LOC107560229
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10934775 ~ 10943764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020135
TTTTGCTAAATGCTACTATATACGACCATATGAGCAAGGGGCGGGGCTTTcgtatcacacacacacaaagtcgACACTGGAGATGCAAACCTCCGAAAAACATTGCTGCGTCCAAGACAAGGAAGTGAGCGAGAGAGCTTTGTGCAAGACCCTGCTGGGAAACCGTGACTCCCTGACACAAGTCAACACCAGGGAAATCCCCCACACCAGCAAGGATGTGGCCGTGCAGTCCGGGGAGTGTCGCACCTTCTGTCAGGTTTTTATAAGGGGGATCATGGCTACGCAGGACCCATCACCACCCTCGTCTCTGGAAAGCAACAAACCTGGATTCCCCAAAAAGATTTTGGCCAACAAGCTGGAAGAGAAACACCTGTGTAACAGCTGCCAGAATCTGCTGAGGAGACCCTTTCAGGCTCGGTGTGGACATCGGTTTTGCTCATATTGCTATAACAGAGCAGTTAGCTCTGGACCTCAAAAGTGTGGTGCTTgtataaaagaagaaatattTGAAGAGCCAACCTCTATTTTAGCACAAGGCTGTGCATTCCCGGACAATGCTGCGCGTAGAGAGGTGGAGGCCCTGCCTGCCGTTTGTCCAAGTGATGGATGCACCTGGACAGGCACTATTAAAGAATATGAGACTAACCATGAGGGGAAGTGTGAATTCATGATCATTCCTTGTCCGTCATGCGGAGAAGCCATAAGATTTAATGAACAGGAACGTCATAATGAACGAGAATGTCCTGAAAGAACTTTGAATTGCAAGTACTGCAAAgaaccatttcattttaaaaacattaagTATGTGGACCATATTAAGTTCTGTAGTAAATTTAGAGCTCCTTGCAGATTTCATGTTGTTGGGTGTAATACGTCAgTGGAAAAGGAGAAGGTGCTTGACCATGAGCGAGCATGTTCATATGAACACTTAAACTTGCTGTTGCACTACATCATGGGCATCAAGGTGAACTTGGAGGGGATACAGCCCCAGAGTCTGGAGCACGCCAGCCTGAAGATCCACGAACTGCACCAGTCCATGCGGGAACTGGAGGTCAAGATGGGTCAGCTGAATGTGGTGCCTCCCGTGCAGGGAGCCTGCGCCCCCGTAGCCATGGCCACCTCCTTCACCCCGCTGCCGACCACTGCGGCGGCCGCTctggagctgcagctgcacagcgAGAAGACTAAGGTGGCCGAACTGGGCCGGCGCTGCCAGGATCTGGAGCTGAAGGTGGGCACTTTCGagaacattgtgtgtgtgctgaacCGAGAGGTGGAGCGCTCGTCCACCACCCTGGAGGCTTACAACCGCCAACATCGTCTGGACCAGGAGAAGATAGAAACCCTCAGCAACAAGgtgcGTCAGCTGGAGAGGACTGCGGGGCTGAAGGACTTGACCATCGCGGAGATGGAGGGGAGACTGCGGGAGCTGTCAGCCGCCACCTACGATGGTGTCTTTATCTGGAGGATCTCGGAGTTCAGCAAGAAGAGGCAGGATGCCATCGCAGGACGAGCCCCAGCCATGTTCTCTCCAGcattttacacCAGCAAGTACGGATACAAGATGTGTCTGCGGATTTACCTGAACGGGGATGGGACAGGCCGTGGCAGCCACCTCtccctgttttttgttgtgatgAGGGGACAGAGTGATGCCCTGTTGAAATGGCCTTTTAACCAGAAGGTGACCTTGATGCTACTAGACCAGAATAACCGGGAGCACATCATTGACGCCTTCCGCCCCGACGTCACGTCGTCCTCATTCCAGCGTCCAGTGAGCGAGATGAATATTGCCAGTGGCTGCCCGCTCTTCTGCCCGCTTTCCAAGCTGGACTCCAAGAACTCCTACATCCGTGATGACACCATCTTCATCAAAGCCATCGTGGATCTCACTGGGCTGTAGCCAGTCTGTATATCAGGCCTGGGCCCTTTTCAAGCAGTATAAGTCTTTGGTTTTCGTACCTCGTTACCTCTCGTTGGTCGAaagcttcttcttttttttttttttttactgccaaTTGCAAGGCATTTATCAAGGTGCCAGTAAGCATGATGTGATGCCTTGAATAAGATCCTGCAATGACAGAacatttcactgcatttttGTCTGTGCTTAAAGGTTTCAGTAGACAGTAATATTGTCATATAACATGAGGCACTGCGTCTGTAAGATTTTAGGAATTTGTGGAAGCAAGTAGTTGTGGGTGACAAATGTGGAAATAGAAAATGGCCGAATCCtaaccagtttttttttttttttttttttt

Function

NR:

description
TNF receptor-associated factor 2-like

GO: NA

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020135 True 2267 mRNA 0.50 10 10934775 10943764

Neighbor

gene id symbol gene type direction distance location
AMCG00020136 NA coding downstream 117850 10783364 ~ 10816925 (-)
AMCG00020133 NA coding downstream 155388 10773696 ~ 10779387 (-)
AMCG00020132 NA coding downstream 207244 10704975 ~ 10727531 (-)
AMCG00020124 NA coding downstream 286936 10631292 ~ 10647839 (-)
AMCG00020125 NA coding downstream 383979 10544785 ~ 10550796 (-)
AMCG00020140 mapkap1 coding upstream 154710 11098474 ~ 11109758 (-)
AMCG00020141 mapkap1 coding upstream 200931 11144695 ~ 11162222 (-)
AMCG00020139 mapkap1,LOC107103532 coding upstream 237622 11181386 ~ 11187648 (-)
AMCG00020151 angptl2,LOC106579898,LOC107669255 coding upstream 874961 11818725 ~ 11843715 (-)
AMCG00020155 NA coding upstream 1015853 11959617 ~ 11960888 (-)
G61137 NA non-coding downstream 233892 10698129 ~ 10700883 (-)
G61136 NA non-coding downstream 236676 10696618 ~ 10698099 (-)
G61098 NA non-coding downstream 427138 10506408 ~ 10507637 (-)
G61052 NA non-coding downstream 729097 10203839 ~ 10205678 (-)
G61027 NA non-coding downstream 843689 10085913 ~ 10091086 (-)
G61200 NA non-coding upstream 17372 10961136 ~ 10961434 (-)
G61201 NA non-coding upstream 18547 10962311 ~ 10962510 (-)
G61203 NA non-coding upstream 23416 10967180 ~ 10969599 (-)
G61206 NA non-coding upstream 49135 10992899 ~ 10993246 (-)
G61273 NA non-coding upstream 769737 11713501 ~ 11723414 (-)
G61170 NA other downstream 178356 10755468 ~ 10756419 (-)
G60746 NA other downstream 2094830 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 2106666 8812785 ~ 8828109 (-)
G60516 NA other downstream 3372183 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 4463341 6467271 ~ 6471434 (-)
G61269 NA other upstream 751927 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 1057936 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 1540605 12484369 ~ 12509937 (-)
G61589 NA other upstream 2054074 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 2273232 13216996 ~ 13224512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_04841245_04848286 TRAF2A coding CI01000339 null 4840259 ~ 4848286 (-)