AMCG00020139 (mapkap1,LOC107103532)


Basic Information

Item Value
gene id AMCG00020139
gene name mapkap1,LOC107103532
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11181386 ~ 11187648 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020139
atggCTTACTTGGATAACCCTGCCATCATCCTGGCACACATTCGTCAATCCCACGTGACCAGTGATGACACTGGTATGTGCGAGATGGTGCTGATTGACCATGACGTGGACCTGGAGAAGTGCCAGCTGGCTGCCGTGCCCGGGAGTGGCAGTGGGGCGGCCATGCAGGGTGACAGTGGGGGGGAGAGTCAGGGCTGTGACCTCTCTCAGTCCGTCGACATTACCTCAAGCTGGGACTTCGGGATCCGGAGACGATCAAACACAGcTCAAAGGCTTGAAAGGCTTAGAAAAGAGCGGCAGAACCAGATCAAATGCAAAAACGTTCAGTGGAAAGAAAGGAACTCCTCGCAATCAGCTGAAGACCTGGGCTCGCTGTTTGAGAAGAAGGACTTCAAGGACAAGACGAGGAGTAGTGGGAAGCAGTCGACTCTCTCCCTGCGCCTGGAGCAGTGTCCACAGCAGCTCAACAACCCTTTCAATGAGTACTCCAAGTTTGATGGCAAG

Function

symbol description
mapkap1 Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within cell migration involved in mesendoderm migration and regulation of cell projection assembly. Predicted to be part of TORC2 complex. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human MAPKAP1 (MAPK associated protein 1).

NR:

description
PREDICTED: target of rapamycin complex 2 subunit MAPKAP1-like isoform X2

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020139 True 504 mRNA 0.54 3 11181386 11187648

Neighbor

gene id symbol gene type direction distance location
AMCG00020141 mapkap1 coding downstream 19164 11144695 ~ 11162222 (-)
AMCG00020140 mapkap1 coding downstream 71628 11098474 ~ 11109758 (-)
AMCG00020135 LOC103036375,LOC107681247,LOC108423724,LOC102294584,LOC107560229 coding downstream 237622 10934775 ~ 10943764 (-)
AMCG00020136 NA coding downstream 364461 10783364 ~ 10816925 (-)
AMCG00020133 NA coding downstream 401999 10773696 ~ 10779387 (-)
AMCG00020151 angptl2,LOC106579898,LOC107669255 coding upstream 631077 11818725 ~ 11843715 (-)
AMCG00020155 NA coding upstream 771969 11959617 ~ 11960888 (-)
AMCG00020153 fbxw2,LOC106571134 coding upstream 785975 11973623 ~ 11989110 (-)
AMCG00020162 NA coding upstream 864566 12052214 ~ 12069743 (-)
AMCG00020158 ncs1,ncs1b coding upstream 882998 12070646 ~ 12085537 (-)
G61206 NA non-coding downstream 188140 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 211787 10967180 ~ 10969599 (-)
G61201 NA non-coding downstream 218876 10962311 ~ 10962510 (-)
G61200 NA non-coding downstream 219952 10961136 ~ 10961434 (-)
G61137 NA non-coding downstream 480503 10698129 ~ 10700883 (-)
G61273 NA non-coding upstream 525853 11713501 ~ 11723414 (-)
G61302 NA non-coding upstream 737916 11925564 ~ 11927864 (-)
G61424 NA non-coding upstream 1206637 12394285 ~ 12395028 (-)
G61470 NA non-coding upstream 1243154 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 1306153 12493801 ~ 12499426 (-)
G61170 NA other downstream 424967 10755468 ~ 10756419 (-)
G60746 NA other downstream 2341441 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 2353277 8812785 ~ 8828109 (-)
G60516 NA other downstream 3618794 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 4709952 6467271 ~ 6471434 (-)
G61269 NA other upstream 508043 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 814052 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 1296721 12484369 ~ 12509937 (-)
G61589 NA other upstream 1810190 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 2029348 13216996 ~ 13224512 (-)

Expression


Co-expression Network