AMCG00020153 (fbxw2,LOC106571134)


Basic Information

Item Value
gene id AMCG00020153
gene name fbxw2,LOC106571134
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11973623 ~ 11989110 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020153
ATGCCACTGCCATCCTTGCCGGGCTGCGGCCTCAACTGGTTTTCACCCTGGGTCGCCCCATCGTCGCCCCATCGTACCAGAATCACCATCCTGGAGCAGGGCGATGAGCCAGACGGGCAGCTGTTCAGGATCTGGGACGAGGCGGGGCGAGGCATTATCTATACCATACAGCCGCTGGAGCGGGCAGGACTGGCACGGCAGCGGGTGCAAGCCACCACCCGCTCCCCCGAGGGCCAGGTCAAATACCAGAGCATTTTCATTATATGGCCATCACCAGCTACCCTTACTGAGCCCCTGCTTGGAGCTTGCcaACCGACCTCCCGCTACTCACTGTCAAACACAACTTCCTCCCACCGACTTCCGGCTACCGCAGTTCCTGTACAGAAGAGGAGCTATATAGTTCAGACCAAGAAATGTAAACTTTCCCATGAGCTCATGGAGAAGGTGGCCTTTGAAGGGTGGCTGGAGTCTGTCTCTGCCTCCTTTCTCACCTTGAGTGACCAGCAGAAGAACCAGTCTCTGGACCACCTGATCGGCCTGAGCGGGGCGGCCCAGCTGCGGCACCTCTCCAACAGTCTGGAGACGCTGCTCAAGAGGGATTTCCTCAAGCTGCTGCCCCTGGAGCTCACCTTCTACCTGCTGCGATGGCTGGACCCCAAGACCCTGCTCACCTGCTGCCTGGTGTGCAAGCAGTGGAACAAGACCATCAGCACCTGCACGGAGGTGTGGCAGGGGGCGTGCCGAGACCTGGGCTGGCAGATCGATGACTCCATCCAGGACGCCATGCACTGGAAGAAGGTGTACCTGAAGGCCAAGCTGAGAATGAGACAGCTGAGGGAGCAGGAGGCCTTCGAGACGTCCTCTCTGATTGGCCACAGCGCCAGGGTGTACGCCCTCTACTACAGGGACGGCCTCCTCTGCACAGGTTCTGACGACCTTTCCGCCAAACTGTGGGATGTCTGCACTGGCCAATGTATCTACGGcatccagacacacacatgcgctGCGGTGAAGTTCGACGAGCAGAAGCTGGTGACGGGGTCCTTTGACAACACCATAGCCTGCTGGGAGTGGAGCTCAGGTGCCAAAATTCAGCACTTCCGGGGACACACGGGTGCAGTGTTTAGTATAGACTACAACGATGACCTTGACACTTTAGTAAGTGGTTCGGCGGACTTTACTGTGAAAGTTTGGGCTCTGTCAGCTGGGACCTGTCTCAACACCCTCACGGGGCACACAGAGTGGGTGACCAAGGTCTGGCCGATAGGGAGAGAGATAAACTGCAAATGTTTAAAGACATTGTCGGTGTCGGAGGACCgcagtgtgtgtctgcagcCGCGGCTCCAGTTTGATGGCAGATACATCGTGTGCAGCTCTGACCTCGGCCTGTATCAATGGGACTTTGCCAGCTATGAAATTCTCGGGGTTATCAAAACACAGGACTCTGCTAACCTCTCGCTACTGAGTTTTGGAGAAGTGTTCGCTCTTTTGTTTGACAACCgttatttgtatattatggACCTGAGGACAGAAACGATAACTGGTCGCTGGCCTTTGCCTGCCTACAGGAAGTCCAAGAGGGGCTCCAGCTTCCTGCCTGGAGTGACCGCCTGGCTGAATGGACTGGATGGCAAGAATGACTCCGGCCTGGTGTTTGCCACAAGCATGCCAGACCATAGTATCCATTTGGTTCTCTGGAAAGAGAATGGATAAGAGCTTGAACCCCCTCCTTCCCACCTTCTCCCACTGGACATTATGTAACTGGTGCTGCTTATTTAAATCCGTGGCCATGAAGTCAGACATTGCATGAACCAAAGTTTCGCACCTGAAGAAATcaccctgcccccccctccccccacacacagacacatcgTGCTTTTAGAAAGAATAAAATTAAGACAAGCCATCGAGCATGCACACAGTCCCCgccaacacacccacacacagccaCGTACAAAGAAAGTTAAACACACATATGCGTACTTGTttgcaaaccttttttgtttttaatttttgttttaatttccaagaAACTAACACAGAGCGTATTGTATGATGCCCCCGGTCAGGTCATTTAGCTGTTGGGCTTATTCAGAATGTGAAATGATTGTCTTTAACCATGTTCCATGGATATGtgcttaaacaaataataataattatcaaaaGTAGACCCACTGAGAACGGCAGCGCATTGCACAAATGTGGGGCCGATCTACAGAGTTACCTCACTAAATGTCCCCATTTCTTCTGCTTCCTTAGAAGGTCAGTATATTCCTGCTTCAAGTCAGCGATGATGGCTAGTTATTTAATAGCTATACAATATCTACATGTTTTGAAAGTACTGTACCATTTCAAGTATAGTCTAAAGTCTTCCCACAGTACACCAGCTTATTACAGTATCATGTTCATTGGCCAATAAggacacatttatattttgtccaTGCCCACATTTAATTGGACActgatgtttgtgtgtatgctataagtatgtatatacatatgtacataagTAAAGGGATCATTCTGTAGGTCAcccaattattttttctttagtccTTTATTAACCCATGAACCTAGAATAACGAATCTGGTGCCTTGTTAGTATATCTGGTGCAATAGGACTCTTGCTGGTGTTCAGgaaatatcttaaaatgtcCAAAATCATATTCTTATAGAATTGAATTATTGATAATATGCTGTATTTCCTATGGCATATATATGACTGTACTCTAGAGGACACTACAgttttagaaatcaaaatggTGTAACTTTGTCAAGGAAGAATAAGGCAGTACATTATGTAAACTTTTATacttccatatttatttatttattttatgttacaaCCTCTCTTCAGTTGTAATATTGCAGTATTAgccaactatatatatatattttgttttaaagaaaatgactTTCTTCAGAACCTCATTCGTTAAGCTTCAACTGTAactgtagtgtttttttattctgtaataatttaatgaaagtTCAAAATTGGTAAATTTGTAgtgctggtttcacagacccagattagtcCTTTGGCTAATCAGTGGTATTTTAGGTGGAGTAGTCCAAGACTACAGCTAAGTGAGGATCTGTGTAACCAGCAGGAAAGGGGTCCAAACTCGGGCCCCAGTTGGCCACAGACCAGCCAGATTTTTAATATAACCTGTAAgtcaaaaatatttgtaatatcaaCACCTTGTTATAGCCCTGGGTTAACAATTAACCTCATCTTATCTGTCCTTTGTAAGTGAAAAACTCAGTAGGTGATGACAGTTGTTTTTTGCCAGAGGTGTCTTGTTTCTACCTGTTGGCAATCTGCCCTCAAAAACTTGGTTTGTATTTTGCCCTGGATCTGTAGGTTctgatgttttgatttgatacAGACCTCAGACAGATCCAATAACACCggtaaaagttttaaaatttagatttttaatttaaactaattcTGGAAATCCAGGTAAAACAGCAGCCTGTAAGTGTGGTACAACCAGGACCTGGAGTTAAGACTCCTTCTGACCTTTTAGGTCTAATTAAAACCGATTCTGCTTGGATGTTAAATAACCACGGGTTAAAGCTTTGTGAATGAGGTTAGGATGAACTGGTCCTGAGGTAAATTACTTTGAGGATTGACATTCTTTGGCTATTCTGTGTCATTTTTAAGGTTCCTGAGGTTGATatcattaaaatgaacatttgtacATGTCAGACAGATTGTTCATCTCCCATGTTTTGGGAGAGGATCATACAAACACCCATTATTTtgatgcttattattattactataataatcataattgttTTAAGTGGTTTTATAAAAGACTGAATGGGTGACAAAATTACAATAGATACTCActtgaacaaagaaaaactaaaacacactgATGCTTTTTTGGTACTGATCATTGTGACTCCATTATATTAATGACATAGTCATGTCCTTACAGTAGTAATTATGTTCTGCCATTTAGATTAGAGATCAAATACAACTATTGGGAGAGATTGTATAGACAAAACGCTATCGTAGTTCTAAACACTAGTGATTTTCAaaggcaaaacaacaacattccaGCTGTTTATCCtcttaaaaaaatcacaaactattattattcagtATCAACATGTTTTGAGAATGAGGAGCGATTATTGATTATTTCTGAGAGATAACATTACCCACCAATACACACACTAAGCACTTTGTCTCGTCTAATTCCCCCAAAATGTATTGACACACTTGCTGGCTGTACTCTCACCGAATTCTGTGAAATGAAAGTGCATTTTTCTGCTGACTCGCTTTTCGCATtgtaaaactttaaatgttttctgaatgtctttatttttacacta

Function

symbol description
fbxw2 Orthologous to human FBXW2 (F-box and WD repeat domain containing 2).

NR:

description
PREDICTED: F-box/WD repeat-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K10261 FBXW2, MD6; F-box and WD-40 domain protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020153 True 4356 mRNA 0.44 7 11973623 11989110

Neighbor

gene id symbol gene type direction distance location
AMCG00020155 NA coding downstream 12735 11959617 ~ 11960888 (-)
AMCG00020151 angptl2,LOC106579898,LOC107669255 coding downstream 129908 11818725 ~ 11843715 (-)
AMCG00020139 mapkap1,LOC107103532 coding downstream 785975 11181386 ~ 11187648 (-)
AMCG00020141 mapkap1 coding downstream 811401 11144695 ~ 11162222 (-)
AMCG00020140 mapkap1 coding downstream 863865 11098474 ~ 11109758 (-)
AMCG00020162 NA coding upstream 63104 12052214 ~ 12069743 (-)
AMCG00020158 ncs1,ncs1b coding upstream 81536 12070646 ~ 12085537 (-)
AMCG00020161 NA coding upstream 139498 12128608 ~ 12156720 (-)
AMCG00020160 NA coding upstream 185578 12174688 ~ 12184458 (-)
AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding upstream 217582 12206692 ~ 12207552 (-)
G61302 NA non-coding downstream 45759 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 250209 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 980377 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 1004024 10967180 ~ 10969599 (-)
G61201 NA non-coding downstream 1011113 10962311 ~ 10962510 (-)
G61424 NA non-coding upstream 405175 12394285 ~ 12395028 (-)
G61470 NA non-coding upstream 441692 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 504691 12493801 ~ 12499426 (-)
G61488 NA non-coding upstream 589561 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 730257 12719367 ~ 12743437 (-)
G61269 NA other downstream 271978 11695691 ~ 11701645 (-)
G61170 NA other downstream 1217204 10755468 ~ 10756419 (-)
G60746 NA other downstream 3133678 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3145514 8812785 ~ 8828109 (-)
G60516 NA other downstream 4411031 7440803 ~ 7562592 (-)
AMCG00020159 NA other upstream 12590 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 495259 12484369 ~ 12509937 (-)
G61589 NA other upstream 1008728 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 1227886 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1606408 13595518 ~ 13596917 (-)

Expression


Co-expression Network