AMCG00020160


Basic Information

Item Value
gene id AMCG00020160
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12174688 ~ 12184458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020160
ATGCTGGGGTTTGTAGCCAGAGCTATGGCCAAGCCAGGCATGCTGAAGCCCTCGCACCTGGTGAAGCCCGTGTCGGTGACCAGGATACCTGGGAGGTACCTGGTCCACCAGGAGGGGCTCCCCAAGCTGCCGGTGCCACCGCTCAGACAGACGCTGGAGCGTTACCTGCGGGCGCTGCAGCCCATCGTCAGCGCAGAGGAGCTGGCGCACACGCAGCAGCTGGTGGAGGAGTTCCAGAGCTCCGGGGGCGTGGGAGACCGGCTGCAGAAGGGCTTGGAGCGCCGGGCCAAGAAGACTGAGAACTGGCTCTCAGACTGGTGGCTAAACACGGCCTACCTGGAGTACCGGCTGCCCGTGGTGATGAACTCCAGCCCTGGCGTGGTGCTGCCGCGGTTAGAGTTCACAGACCGCCAGGGACAGATACGgtTTGCTGCTAAACTCATCGCTGGGGTTTTGAATTTCAAATCCATGATCGACAATGAGACTCTGCCTGTGGAGTACCTGGGGGGGAAGCCACTCTGTATGAACCAGTACTACCAGATCCTCTCCTCCTGCCGCATCCCCGACCCCAAGAGGGACTCGGTGGTGAACCATGCCCGCTCGAAGAAGCCCCCAACGCATATCACTGTGGTACACAACTTCCAGTTCTTCGTCCTGGACGTGTACAACAGCGACGGGTCCCCCCTAACTGTGGATCAGATCTACATCCAGCTGGAGAAGATCTGCAACTCCTCCCTCCAGACCAACAAGGAGCCCATCGGCATCCTGACCTCCCAGCACAGGAACACATGGGGGAAGGCCTACAACAACCTCATTAAGGGTGAGGCGGTGGGCAGGGAGGAGGCTGGAGTCTGGGGAGACTTGGACAAGACGAATAAGGAGTCGGTGCGTGCCATCCAGAAGAGCATCTTCACGGTGTGCCTGGACGCGCCCATGCCGCGCGTGTCGGACGAGCTGTACCGCAGCCGCGTGGCTGCGCAGATGCTGCATGGGGGGGGCAGTCGCTGGAACAGTGGGAATCGCTGGTTCGACAAGACGCTGCAGTTTATCATCGGAGAAGACGGGTCATGTGGTCTGATCTACGAACACGCCCCCGCAGAAGGCCCGCCCATCGTGTCGCTGGTGGACCATGTGGTGGAGTACACGAAGAAGTCTGAGATGGTACGCTCTCCCATGATTCCCCTGCCCATGCCGCAGAAACTCCGCTTCAACATCACGCCCGAAATTAAGAAGGACATCGAGAAGGCCAAGCAGAACCTCAACATCATGGTGCACGATCTGGACGTGAAAGTGAGTGTGTTTACACACTTTGGAAAACACTTCCCCAAGTCGCAGAAGATGAGTCCCGACGCCTTCATTCAAATGGCCCTGCAGCTCGCTTACTACAGggTGTATAACCGTTGCTGTGCTACCTACGAGAGCGCGTCTCTGCGGATGTTCCGGCTGGGCCGCACCGACACCATCCGCTCCTCCTCCGTGGAGTCCCTGAACTTCACGCAGGCCATGGACGACCCCACGCGCCAGgCGATCCAAGGGCAGGCCATTGACCGGCACCTGCTGGGGCTGCGGCTGCAGGCCATCGAGGACCTGACCAGCATGCCTGAGATCTTCATGGACACGGCCTACGCGGTGGCTATGCACTTCAACCTCTCCACGAGCCAGGTTCCGGCCAAGACAGACTGTGTGATGTGCTTTGGCCCAGTGGTTCCAGACGGCTACGGCGTGTGCTACAACCCGATGGACGACCACATCAACTTCGCCGTCTCAGCCTTCAACAGCTGTGCGGAGACCAACGCTGCGCGGCTCTCCCAGGCCCTGGAGGAGGCCCTGCTGGACATGAGAGCGCTGCTGGTGCAGACACCCCAGTCCAAACTGTGA

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020160 True 1878 mRNA 0.60 13 12174688 12184458

Neighbor

gene id symbol gene type direction distance location
AMCG00020161 NA coding downstream 17968 12128608 ~ 12156720 (-)
AMCG00020158 ncs1,ncs1b coding downstream 89151 12070646 ~ 12085537 (-)
AMCG00020162 NA coding downstream 104945 12052214 ~ 12069743 (-)
AMCG00020153 fbxw2,LOC106571134 coding downstream 185578 11973623 ~ 11989110 (-)
AMCG00020155 NA coding downstream 213800 11959617 ~ 11960888 (-)
AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding upstream 22234 12206692 ~ 12207552 (-)
AMCG00020167 NA coding upstream 187373 12371831 ~ 12375148 (-)
AMCG00020168 NA coding upstream 191675 12376133 ~ 12381749 (-)
AMCG00020174 NA coding upstream 211097 12395555 ~ 12408952 (-)
AMCG00020175 pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032 coding upstream 230526 12414984 ~ 12418228 (-)
G61302 NA non-coding downstream 246824 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 451274 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 1181442 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 1205089 10967180 ~ 10969599 (-)
G61201 NA non-coding downstream 1212178 10962311 ~ 10962510 (-)
G61424 NA non-coding upstream 209827 12394285 ~ 12395028 (-)
G61470 NA non-coding upstream 246344 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 309343 12493801 ~ 12499426 (-)
G61488 NA non-coding upstream 394213 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 534909 12719367 ~ 12743437 (-)
AMCG00020159 NA other downstream 122477 12001700 ~ 12052211 (-)
G61269 NA other downstream 473043 11695691 ~ 11701645 (-)
G61170 NA other downstream 1418269 10755468 ~ 10756419 (-)
G60746 NA other downstream 3334743 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3346579 8812785 ~ 8828109 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 299911 12484369 ~ 12509937 (-)
G61589 NA other upstream 813380 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 1032538 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1411060 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 1479618 13664076 ~ 13665592 (-)

Expression


Co-expression Network