AMCG00020168


Basic Information

Item Value
gene id AMCG00020168
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12376133 ~ 12381749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020168
CCGATGCTTACACATGCCCGCTCCCGACCGTAAAGCGAGTGAGGTGCAGCACAGCAGCGCCCGCTACCAAACCACTTTACGGCAACGTGTAGTCCTTCGGAGTCAGTTGCTCACCGGGTTGTGTCCGCTGGCGGAATAACGTCTCTAGCTGCATGATTGAAGGTCTTCGGACAGGCACACCAGCATGTCATGTCCCACCCTATTGGTCCTGTACGGCAGCCAGACCGGGACAGCCCAGGACACAGCCGAGCGGATTGGACGACAGGCCCAGAGGAGGCGGGTTGAAGTCAGGGTGGAGGCACTGGACAGCTACAATGTGgcAGATCTTATCACAGAGTCTCTGGTGCTGTTTGTGTGCTCCACCACAGGGCAGGGTGACCCCCCAGACAACATGAAGAATTTCTGGAGGTTCTTGTTCCGGAAGTCTCTGCCGGCAGGTTCTCTGTGTCGGCTGGACTGCGCAGTGCTGGGCCTGGGAGACTCCTCCTATCCCAACCCTGATGCCGTGATTGACCCCTGGCTCATTGCATTCTGGGACAGGGCGCTGGCTCTGTACCCACTTCCTGCCGGAGTGACCATGCTCAGTGAGAATGAGCTACTGCCCCCGAGATACGTCTTCAACTTTCTGGATGATGCCACAGAGGAGCCAGAGACCCTATCATGTGATGGGGGCATAGCTCCCCAGGCCCCACCATCCAGGGACCACCCCTTCCTGGCCAGGATGGTGTCCAATCAGAGAGTGACACTCCCCTCGCATTTCCAGGATGTGCGGCTCATCGAGTTTGACATTGAGGGCTCAGGCATGAAGTTCAGTGCAGGGGATGTGGTTCTGATTCAGCCCTGCAGTGACCGGGCCCATGTGGAACAGCTGTGCCAGCTACTGGGACTCAACCCACAGCGTCGCTTCACCCTCACCCCCACAGGCAACGCCCCGGTACCTCCACGGCTGCCCCAGCCCTGTTCTGTGCAGTACCTGCTGGAGAGTTTCCTGGACGTGGGCAGCGTGCCACGCCGCTCCTTCTTTGAGCTGCTGTGGGGCTTCGCCAGCGATGGGCTGGAGAGGGACAAGCTGGCGGAGTTCAGCTCGGCCCAGGGCCAGGAGGAGCTGCACAGCTACTGCAACCGGCCGCGCCGCAACGCCATCGAGGTCCTGACAGATTTCCCCCACACCACGGCAGCCCTGAAGGTGGAATACTTGCTGGACCTGTTCCCCGAAATCTCTCCGCGCTCCTTCTCCATCGCTTCCTCCCCACTGGTCCACCCCGGTCGACTGCAGATTCTGGTAGCAGTGGTTCAGTACCGGACCCGGCTGGTACACGTGCCTCTGTGGGTGAAGAAAGGAGGACTGAGGCTTCCCAGCGCCATAGACACCCCCGTGATCATGGTGGGGCCTGGGACAGGGGTGGCGCCCTTCAGAGCTGCCCTACAAGAGAGGATAACCCAGGGTGGGACAGAGAACGTGCTGTTTTTTGGCTGTCGCTCGCAAGCTGCCGATTTCTACTGCCGTTCGGAGTGGGAGGAGCTACAGAGGTCCGGTGGACTGACACTGTTCACGGCCTTCTCCCGAGACCAGGGGGAAAAGGTGTATGTACAGCATCGTGTGAGAGAGCAGGCAGAGCTGCTATGGGAGCTGCTCGCTCACAGGAACGCTCACTTCTACATCGCAGGCAATGCAAAGCAGATGCCGGCCGCAGTGTCCGAGGCGGTCAGTGCTGTGCTCCAGTCTCAGGGGGGCCTGGGCGCCATGCAGGccgaggagctgctgcaggagttGGAGAGACAGGGGCGCTTCCAGACCGAGACATGGTCCTGAGCCAGTCGGACTGGACAGAGGGGGAGCTGGAGAAAGAGGGGAGCACACTGGACTTCACTGGGGGACACAGAAACAGACTGCACTGGTTCCACCTGGACTGAATCGTCTTTTGGGGCTTTTGTGAGAtcaacacacatacagattCCCCATTCAGTTCATGGGCATCAGTGATGGGGATTGATACAGCATATGCAGCGTCTACTGACTAAACAGGAAGACACTACCggaatttttttttgtttttatcttttgcattacaattttctattattattattgggtcCACTGCTGGGTTACTGCTCCTGTCAGGGGGAAGGGAAGCCATCAATAAAACTGATGTGttatatggtgtgtgtgtgtgcgtgagttgGTACACGTTGATGAGGGCGGGTTTAAGCTGTCAGAGTGGGAAAGTGTAGCGCATTTCCGCCTCGAAAAACGACTACCAGTGAATCCACCCAATAAGGTGAGCGGTGcctgtgaataaattaatatattagcCAAAGACGCACGATGATTGGTTCGTGACGCACG

Function

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020168 True 2347 mRNA 0.57 14 12376133 12381749

Neighbor

gene id symbol gene type direction distance location
AMCG00020167 NA coding downstream 985 12371831 ~ 12375148 (-)
AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding downstream 168581 12206692 ~ 12207552 (-)
AMCG00020160 NA coding downstream 191675 12174688 ~ 12184458 (-)
AMCG00020161 NA coding downstream 219413 12128608 ~ 12156720 (-)
AMCG00020158 ncs1,ncs1b coding downstream 290596 12070646 ~ 12085537 (-)
AMCG00020174 NA coding upstream 13806 12395555 ~ 12408952 (-)
AMCG00020175 pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032 coding upstream 33235 12414984 ~ 12418228 (-)
AMCG00020179 NA coding upstream 135057 12516806 ~ 12529593 (-)
AMCG00020178 NA coding upstream 168821 12550570 ~ 12562984 (-)
AMCG00020185 NA coding upstream 215910 12597659 ~ 12598234 (-)
G61302 NA non-coding downstream 448269 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 652719 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 1382887 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 1406534 10967180 ~ 10969599 (-)
G61201 NA non-coding downstream 1413623 10962311 ~ 10962510 (-)
G61424 NA non-coding upstream 12536 12394285 ~ 12395028 (-)
G61470 NA non-coding upstream 49053 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 112052 12493801 ~ 12499426 (-)
G61488 NA non-coding upstream 196922 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 337618 12719367 ~ 12743437 (-)
AMCG00020159 NA other downstream 323922 12001700 ~ 12052211 (-)
G61269 NA other downstream 674488 11695691 ~ 11701645 (-)
G61170 NA other downstream 1619714 10755468 ~ 10756419 (-)
G60746 NA other downstream 3536188 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3548024 8812785 ~ 8828109 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 102620 12484369 ~ 12509937 (-)
G61589 NA other upstream 616089 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 835247 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1213769 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 1282327 13664076 ~ 13665592 (-)

Expression


Co-expression Network