AMCG00020171 (rpl12)


Basic Information

Item Value
gene id AMCG00020171
gene name rpl12
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12408962 ~ 12414951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020171
TTCTGTCTCTTTTACTCCGGTGAAGGTGCAACAGTAATCGGTCGTCCCGAATCCGGGTTCATCCGACACCAACACCGAACCAAGCAGAACTGAACCGCAGCTCCTCTACAACACGCAGCCATGCCTCCCAAATTTGACCCCAACGAAATTAAAGTTGTGTTCCTGAGGTGCACAGGAGGAGAAGTTGGTGCCACCTCTGCTCTGGCCCCCAAGATCGGACCCCTGGGTCTGTCCCCCAAGAAAGTGGGTGATGACATTGCCAAGGCAACCGGTGACTGGAAGGGCCTGAGGATCACAGTGAAGCTGACCATCCAGAACAGACAGGCACAGATCGAGGTGGTGCCCTCTGCCTCTGCCCTCATCATCAAAGCACTGAAGGAGCCCCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACAGCGGCAGTGTGACCTTCGATGAGATCGTGTCCATCGCCCGGCAGATGAGGCCGCGCTCCATCGCCAGGGAGCTCTCTGGAACCATTAAGGAAATACTGGGCACTGCTCAGTCTGTTGGCTGCACCATCGATGGCCGCCCCCCCCACGATGTCATCGATGACATCAACAGCGGCAAAGTGGAGTGCCCCTCGGTGAGTGACCTGTGCTTCTGCCTGCCCTTCTTTCTGCACCCTGCCCTGGCCCAGCATAGTGTCGCAAGCCTGACTCTGAGCACAGAGCTGCTGCAGGGGTCTGTGGGAGAGCCCCCCGCCACTATGCCTGTCTGTGTCAGTGACTGGCTTAATCCAGTGGGGGCTCAGAGAGACCCAGCTCTAGGAAGCAGCGTGGCCCTGACCTGTGGGCGGCTCTGTGCCAAATGGCCTGGAACACACATTGAGATGCATGTCCTCCCACTCCTAGAGGCTAATTCTTAGTGATCTGCTTTTTCTATAGTATTTCTCACACTAGAAGTAACTCTTAACCAGACATTTTCTTCTCTTGCAGGATTAAGATGCCAGCCGAAGGAGTACActcaaaagttaaaataaatttctAAGAAAAATTAAACCTGAGTACAGCCTGGCTTTCTTCTTGGACTCGATGTTCTTGCCATTGGGTGGCTTTGTCAACTAATGAAAAGGGAGAGGGGATTGGTTAAGTAAGGTCACTGTTCAGTGCAGCTAGGGGTTCTGATTCTGGAAGGTTGCAGTGTATAGAGTGGGTATTTGAGTAGTTTCTGATAACACATCTGGCTGGTTGTACAATTATGGCATGGTGACTAACTGCAAACCGATGCACACTAGAAAAAACATGTTCCCCTTTCCCTCAACCTTAAACCAGAGAACTGTGGAGAAATCTAAATCTTGCACAAATAGAGTATTTCAGTTTCACAATTGTAGCCTCACTGTTTCAATTCCTTATTGTGTTGCTCACATTGGTTTTGTTCTCACCCTCCTGCTCTTCTGTAGATGGTTTACTGCTACTTCACCTGGCTAGGATTTATAGTGTAGTTTTTATTAAACCAACATTAAAATTcatcaa
>TU76855
GGCATGGTGACTAACTGCAAACCGATGCACACTAGAAAAAACATGTTCCCCTTTCCCTCAACCTTAAACCAGAGAACTGTGGAGAAATCTAAATCTTGCACAAATAGAGTATTTCAGTTTCACAATTGTAGCCTCACTGTTTCAATTCCTTATTGTGTTGCTCACATTGGTTTTGTTCTCACCCTCCTGCTCTTCTGTAGATGGTTTACTGCTA

Function

symbol description
rpl12 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12).

NR:

description
PREDICTED: 60S ribosomal protein L12

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02870 RP-L12e, RPL12; large subunit ribosomal protein L12e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020171 True 1501 mRNA 0.50 6 12408962 12414951
TU76855 False 214 lncRNA 0.41 1 12414679 12414892

Neighbor

gene id symbol gene type direction distance location
AMCG00020172 NA coding upstream 13922 12381813 ~ 12395040 (+)
AMCG00020166 NA coding upstream 37250 12368773 ~ 12371712 (+)
AMCG00020165 NA coding upstream 206275 12200128 ~ 12202687 (+)
AMCG00020163 ptpa,LOC102782294 coding upstream 210315 12185834 ~ 12198647 (+)
AMCG00020157 NA coding upstream 236956 12157541 ~ 12172006 (+)
AMCG00020170 NA coding downstream 13465 12428416 ~ 12431152 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding downstream 33817 12448768 ~ 12452785 (+)
AMCG00020169 NA coding downstream 64953 12479904 ~ 12481905 (+)
AMCG00020176 NA coding downstream 148209 12563160 ~ 12564443 (+)
AMCG00020182 NA coding downstream 236208 12651159 ~ 12651764 (+)
G61338 NA non-coding upstream 279391 12126842 ~ 12129571 (+)
G61336 NA non-coding upstream 392215 12016496 ~ 12016747 (+)
G61335 NA non-coding upstream 392811 12015698 ~ 12016151 (+)
G61333 NA non-coding upstream 396555 12011960 ~ 12012407 (+)
G61332 NA non-coding upstream 397086 12011661 ~ 12011876 (+)
G61434 NA non-coding downstream 48 12414999 ~ 12468293 (+)
G61435 NA non-coding downstream 2859 12417810 ~ 12506599 (+)
G61440 NA non-coding downstream 69426 12484377 ~ 12504599 (+)
G61460 NA non-coding downstream 167310 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 415021 12829972 ~ 12852064 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1108930 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1439364 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1653587 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1909456 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 2620910 9784117 ~ 9788052 (+)
AMCG00020177 NA other downstream 104813 12519764 ~ 12542261 (+)
G61491 NA other downstream 200841 12615792 ~ 12619817 (+)
G61675 NA other downstream 934726 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1372063 13787014 ~ 13792944 (+)
G61894 NA other downstream 1418219 13833170 ~ 13834832 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location