AMCG00020172


Basic Information

Item Value
gene id AMCG00020172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12381813 ~ 12395040 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020172
CCtgactttctttctctctcattcagTAACAGGAAACGAAGTGGAAGTTGTGTGTTTCTATctatctgtgtgtatgtctgtatatatatatatatatgtttgaatgtgtgtgtgagtgagagagtctGGTTTACTGCAACTCTCTTTGGAGGGGGAGTCAGCAGAGTGGAAGCAGAGGGAACAGAAAACGGGTGAGCTGACAGGTCCACCCACACAGGGACAGTGGAGACCCGGGCGGCACAGAGACTGCGGGACCCCTTCTTCTCGTCTCTCTGAGGGTCACTGCGAGGCCCGCCCGCAGCGGCGATCATGTTCGGGGCGGAAGATGAGGACGGAGACTTTTTGTCGCCGACGGGCGGGGCGAAGCTAGCCTCCCTGTTTGGGCTGGACCAGGCCTCTAGTCAGGGCAACGAGTCGTTCCATTACACTGCCCCCAAGCAGCCGAAGAAAGGCATGGCCGGCACAGGTCCGCCCTCCCAGAAGCCAGCCCCTTCCCCCGGAGCTCCTGCCGTCTTATTGGCCACTGCAGTCCACGCCTTCCGATAtgtgaACGGGCAGTACATGAAGCAGGGGAAGCTGGGAGCTGCAGTCCTGGGGAACCACACGGCCAGAGAGtataaGATCCTACTGTACGCCAGTCAGCAGAAACAGGTGACAGCCTGTAGGATTCACCCAGGGTTCATCTTCACGGTCCAGCCTAGTAACTACGGGACATTTTACGATGATGTGCGGCAGAACTGGTCTGTGATGTTCGAGTCGGAGAAATCAGCCTGGGATTTCTGTAAGGAGgtgtGTCTGGCGAAGGTGAACAGCACCCTTTGTCTGGAGACTGTGGTGCTGCAGGACCTGGCACTGGGGGAGGGGCAGGCCGCAGAAGCCGGAGACTCGCTGGAGGTGGCCTACACTGGCTGGCTGCTGCAGAACCTTGCCATTGGACAGatGTTCGACTCGAACCTGAATAAGGACAAACTGCTGCGACTCAAACTGGGCTCAGGGAAGGTCATCAAGGTGAAGTTTGGCAAGGACAGCGGGTCGGACCGTGCCAGCGCCGGCTCACGAGACTCTGCTGCTCCCTCCCCAGCCCCCAGCATGGACAGCCTGGGCCCTGATCCCGGCCTGCAGCCCCCCAGATCCAACTCTCCCAAACCTGGGGATCTACCCCTGCGTGCCAAGTCCAACTCCCTGAATGAACAGCTGACGAACCCTGACGCCACCAAAGCCAAGCTGATCTCCCGCATGGCCAAGATGGGCCAGCCCATGCTGCCCTTCCTCACGGGGGCGCCTTCTGGCCAGCCAGACTCCAGCGACTCTGAGTTGGAGGACCCCAGTTTATCTCGAGGGAGGGAGCGGAcccctgccccctcctcccAGCCTGTTCCTATGGCAGCCGCCCCCCCAGCCTCTGCACAAGTGCCTCCTCTCCCACTCTCCGGGCCCCCAGCATCCTCCGCTGCCCTGCTCCCAGTCTCCATGACAGCTGCGCACCCCCAGCCAGTCATGCCAGGCTCCGCCCATGCCTTCCAGCCCTACTCTTATCCCCTGCCCACTGCAGCCCCCTCCCAGTTGCAGACAGTGGGCCAGCTGTACTCCCAGCCTGTGGCGTACCAAGCCCCCAGCGATGTCACTTCCTTCCTGATGACAGAGGCACGGCAACACAGCACCGAGATCCGATTGGCTGTGGGGAAGGTGGCAGACAAGGTTGACCAGCTGGTTTCTAAGGTGGATGGCATACAGAGGCAGGGGGGCATGTCGCTGGGCCTGTCTTCTGTCTCCATGGACACTGCTATGATCATGCACAACATCCAGAGAATCATTCAGGAGAATGAGTGTCTGAAGAAGGAGGTGTTTGAGAAGAGCTCTCGCGTTGAGGAGCAAAACCGGAAGATTGGGGAGCTGCTCAACCAGAACCAGAGGTATATGGAGCAGAGTAACCTGGTGCTGGAGCAGAGGACGGACTCTCTGAAGTCCAGCAGTGAGCAGAGCCACGCTCGCCTGCTGCAGGCCGAACAAGACAAGcatgcactgcaacGGGATCTGGGGTGGGACCAGGTGCGAATGACAGAGGAGCTCTCTGCGGCGACTGCACGGGTGTGTCAGCTGCAGCTGGAGGTGGCAGCTCAGCAGCAGAGAGAGGTGGAGTTGCGCAGACAGCTGAGCGCTGCCCTGCAGGATGCAGAGAAGAACTGCGCCCAGGTCAGCAGCCTGCAGGGACAGCTGGCAGAGCTGGGCCAGGACAGGGAGGCCACGCAGACGCAGTTCCACACAGAGAAGCAGCGCAGGAAGGAGCTGGAGGGACGAGTGGCCGGactggaggaggagctgcaggaCCTACGCACACAGAAGGAGTGCCTGGACAAGACGCTGGCGGAGAGGAAGCGTCAGTGGGTGGGCGAGCGGCAGCGCTgtgaggaggagctggaggagctgcggCGGCTCGGCCAGCAGGAGGCTGACAGCCTGAGAGCACAGCTGCGCAGAGCCAGGACTGACCAGAGCAGCACACAGCAGctgTCGCAGCTGCAGGAAGAGCTGGAGCAGGAGTGGCAGGGGCGCTGCGAGAAGCAGCTGGCCGAGGCAAGAGAGCGGCATGGGCGTCAGCAGGCAGAGCTCACAGAGCAGAAGCAGGAGTTGGAGCACAGACTGGCACAACTGGAAGGCCAGctctcTGCACTCAGACAGTCCCGTAGTACCGAGGACCAGCGGTTGCTACAGCATCAGGAGCAGGGGGAGGAGCTGCAGGCCCTGAAAGACAAGTACTTTGCGCTGCAGCAGAGTGTGGTGGTAGAGCGGAGGAGGCTGCAGGGGAGAGTTGCTGAGCTGGAGAAGAAAGGAGCTGAACAGGGAGATACTGCTGAGGAGGTGAAGCGTGTCATGAACAGTGTGTTCCAGTCCTTGCGGGGGCAGTTTGAGCTGCAGGAGAGCTACAGTGGGGGGACAGTGCTGGGCATCCTGGTCAACACCATCAAGAGTGTGACCCTGCAGTCCCTAGCCCGGACAGAGGCAGCGCCAGGGGTCGGGAGCGAGGGGgaacaggaagaggaggagccaGCTGGGGAGGCACGGCCCACAGAGGAACTGCCCACAGAGGAAGTGCAGCAGaatggggaggaggaggaggaagaagaagaagaagaagaagaaaaagaagaaaaagaagagtgTGTAACACAGAAAATGCAGGAGAGTAAAGATGACACCCTCAAACAGGAAGAACAATCACAAGGAGAGGGGTTTAAGCAGGAAGAGGAAATGGCTGTGGAAGACCCCACAAACAAGCAACTGCAGGaacaagaggaggaggagaaaacagGACAGGAAGACTGTGTGAGAGACAAGCCAGCCAGTCAGTCGCTAGGGGAGGAcgtgggagaggaggggggaccaCTTCAACTTGGGGAGAGTCCACCTCCATTTCCTGTTCCAAGTCAGGGGTCAGAGCCcgtggaggagagagggaatgTGGAGACAAGCAGCAGCGAATACCACATCAACACCACCACCCCTCCCAGACAGCAGGGGAGCCTGAAGGGGcgcccccctcccaccccttTGTTCGGcgatgaggatgaggatgatgatgacCTCAATTGGCTGGGCTGAGGGCACAGGAAGTGATGCGTGCCTCAACATGAATGATTGACAGCTGGGCTAGGCAACCACATAATCTTCCCGGCCTGTTGTGGAGTCATGTGACCTACGTTGACTAAACACACCAGGTCTGATCTGACAACCAAATATTACCCCGCCCCAGCACACCCCCACACCCTGCTCAGATGTTTCCCTGTCAAAATCTGTCCCCCTCCCTGCCAGATTCTGCTCCTATACAGACATCTCTTCCAAATACTGCCAGATTCTGCCCCCACTCCCCATACTCTCTCTGGTTGCTTGCCTGGTGGTCTGGAAGGTTAGCACTTtaaacagcagcagctgtggACTGGACTAAACTGGGTGAATTATTAATTTAGGGACACGGAAAAagttttaatgaagaaaaagaaaatcaccagGGGATAAAAGTAGAATTCTGTGGATTTGTCGCTCATGTTGAAGACACCGAGGGGGGGGCTGTGAGGTGACAGTGACTATCTGCAGTCTGAACACAGGGCCTAACCGTTCCAATAACGGCAAACAAGAAGAACACACTGTCGGGGGGggttctgtgttttttaaataagcaaataaatcaCTCGCGTACTGAAGCAGCAGTCATTTG

Function

GO: NA

KEGG:

id description
K17478 FKBP15, WAFL; FK506-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020172 True 4213 mRNA 0.58 28 12381813 12395040

Neighbor

gene id symbol gene type direction distance location
AMCG00020166 NA coding upstream 10101 12368773 ~ 12371712 (+)
AMCG00020165 NA coding upstream 179126 12200128 ~ 12202687 (+)
AMCG00020163 ptpa,LOC102782294 coding upstream 183166 12185834 ~ 12198647 (+)
AMCG00020157 NA coding upstream 209807 12157541 ~ 12172006 (+)
AMCG00020156 NA coding upstream 386702 11992192 ~ 11995111 (+)
AMCG00020170 NA coding downstream 33376 12428416 ~ 12431152 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding downstream 53728 12448768 ~ 12452785 (+)
AMCG00020169 NA coding downstream 84864 12479904 ~ 12481905 (+)
AMCG00020176 NA coding downstream 168120 12563160 ~ 12564443 (+)
AMCG00020182 NA coding downstream 256119 12651159 ~ 12651764 (+)
G61338 NA non-coding upstream 252242 12126842 ~ 12129571 (+)
G61336 NA non-coding upstream 365066 12016496 ~ 12016747 (+)
G61335 NA non-coding upstream 365662 12015698 ~ 12016151 (+)
G61333 NA non-coding upstream 369406 12011960 ~ 12012407 (+)
G61332 NA non-coding upstream 369937 12011661 ~ 12011876 (+)
G61434 NA non-coding downstream 19959 12414999 ~ 12468293 (+)
G61435 NA non-coding downstream 22770 12417810 ~ 12506599 (+)
G61440 NA non-coding downstream 89337 12484377 ~ 12504599 (+)
G61460 NA non-coding downstream 187221 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 434932 12829972 ~ 12852064 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1081781 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1412215 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1626438 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1882307 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 2593761 9784117 ~ 9788052 (+)
AMCG00020171 rpl12 other downstream 13922 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 124724 12519764 ~ 12542261 (+)
G61491 NA other downstream 220752 12615792 ~ 12619817 (+)
G61675 NA other downstream 954637 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1391974 13787014 ~ 13792944 (+)

Expression


Co-expression Network