AMCG00020175 (pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032)


Basic Information

Item Value
gene id AMCG00020175
gene name pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12414984 ~ 12418228 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020175
CCCTGTATGTTAGTCCCAGTATGGTGGTTCAGCGATGTCCCGTTTAACACTGTGTGGTGTCTCGTATGTTTTGAATACAGTTGTGGTTCTGTAATGGGAGTCGAGTTCGGTAAACCTGATAAATAGATACGTCATATATTCATAACACATGTTGTATACaagtgcatattttaaaaggatcCTTACATAGTGAAATAACCGGAGCTGTGTGGCGATGGCCGAGAGACCAGAGGACCTTAACCTGCCCAATGCGGTTATAACTCGCATCATTAAAGAAGCGCTGCCCGATGGTGTGAACGTGTCGAAGGAGGCGAGGAGGGCCATCTCGCAGGCCGCCAGTGTCTTCGTGCTGTACGCCACTTCCTGTGCCAATAACTTTGCGATGAAGGCGAAGAGGAAGACGCTGAATGCAGCAGATGTGCTGGCTGCCATGGAGGAGATGGAGTTCGACAGATTCCTGCAGCCACTCAGAGAGGCACTGGAGGccTATAAGAAGGGCCAGAAGGGGAAGAAGGAGGCGTCAGAGCAGAAGCGCAGAGACAAGAAGAAGAGCGATGCCGAGGAGAACGACAAGAGCCGGGAGGAGGAGaacgaagaggaggaggaggagcaggatgGCGAGAACGAGGctgaggaggaagaggtggAGAACTGAGGAATCCCCCTGGGTGAggggtggtggggagggggggcacaCACATGTGGATAAAAGGACTCAGCAGTGTAGAGACAGTGCTTTACCGAGAGGAATTACCTAGCACAGCTGGGGGGGGGCAGCACTCTGCATTGTAATTACATATCTAGAAAACTTGTGAGGTGAAGCGGTGTGTTTTGGAAAGTGCCATGAACTGATGGACAGAACATGAGGTCCTCTTTCCTTCTGCTGTCATGACTGTGGTAACTAACAGGAAACTGCAATAAATCAGTGGgtataagtaaaaaaaaaaaaaaaaaaattgtataatgATAGAAGTCTCTGTAAaccaaagcttttaaaatgcacagctgaACCTCACCACGGTGCAGATCTGGTGCTCTCTAACCACCACAAACCAGGATAGTGCTCAGTGCTGGAGCCTAGTGGTGATCTGTGGGGCTACAGTTAGATTTGCTCATAAGTACTTTACTTTTTTTGAGAAGGGAGGGGGGCAACTGGCTTTATTCCTCTCAGAAAAGCAGGCATCATGTCCACAATTGGGAACCTGAGTTTTATCAAAACTCCGTGATCCCTGCTAACATGTAGCATGGTATTGGATTCTGACCTCATCTGTGTCCCCAGACTTTGCAGGGAGCTCTCCCCCCACCTATATTTTACCTATCCTAGTTGAGGACACTGTACTCCCCCATCTCTCCCAGTCTCCTCCTCCTGTGAGGgctgcttgtttatttatagagTATTGTTACTCAAGTGATGCCTTAGCAACAACAGAGCAGCTGCTAAATTACAATGGTGTACCAGGATACAGCAATGATTCAgggatttcttaaaaaaaaaaaacaatggtccTCTTTCTGTAAGCAACTGAATAATTTGGATCTCAGTTATTCTCCTAAAAGGGATGGCAGAAATTAATACTTTCAGTCATCAATCAAGTTCAGCTGAAATACTGgaaaagtttaaattataaaaagtaaaactgcaGTCAAGTAAAGAATCCTGCTAAATAACTTAATAGAGGAacatcaaaagaaacaaaactggacTCTCTTCCATAAGTTATCTGTATAAACAAAACTCTAGGTATCCCACCCCATTAGACCTTTGTGGGCAGCTCAAGGGCATTTATAACCAGCACAGCTTCTCAGCCCCTGAAGCAGCTAAACTGGGACTCATACTCTACTCAGTCTCATCAGTCATTTCCAGTAGGAGATATCAGCCTGGTATTTTAAGTTGCCACTAAATCAGGAACTACAGCAGATAAGCCAATGAGACCGGTGCTATGGCTTGAGTGCTACTTTCccataaaaatgtgtattactcTGGGCCTCTCTCTCCATGCACTCGGGCGAGATGCAGGCCCTGGAATTCTGCACAACTGACAATCTTGGTCTCCTAACCACTTCCCTCCTCACAAGCAGATTCTTAGagccattacttatttttttaatccggGTGCAGTTGTATAGACTTGGGGCAGGGAGACTTTCCTTTGATGTACCTTTACttaaatgttt

Function

symbol description
pole3 Predicted to enable chromatin DNA binding activity. Predicted to be involved in cellular response to DNA damage stimulus; chromatin remodeling; and leading strand elongation. Predicted to be part of CHRAC and epsilon DNA polymerase complex. Is expressed in alar plate midbrain region; immature eye; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human POLE3 (DNA polymerase epsilon 3, accessory subunit).

NR:

description
PREDICTED: DNA polymerase epsilon subunit 3-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02326 POLE3; DNA polymerase epsilon subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020175 True 2175 mRNA 0.46 5 12414984 12418228

Neighbor

gene id symbol gene type direction distance location
AMCG00020174 NA coding downstream 6032 12395555 ~ 12408952 (-)
AMCG00020168 NA coding downstream 33235 12376133 ~ 12381749 (-)
AMCG00020167 NA coding downstream 39836 12371831 ~ 12375148 (-)
AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding downstream 207432 12206692 ~ 12207552 (-)
AMCG00020160 NA coding downstream 230526 12174688 ~ 12184458 (-)
AMCG00020179 NA coding upstream 98578 12516806 ~ 12529593 (-)
AMCG00020178 NA coding upstream 132342 12550570 ~ 12562984 (-)
AMCG00020185 NA coding upstream 179431 12597659 ~ 12598234 (-)
AMCG00020184 NA coding upstream 200372 12618600 ~ 12619814 (-)
AMCG00020186 NA coding upstream 223479 12641707 ~ 12646647 (-)
G61424 NA non-coding downstream 19956 12394285 ~ 12395028 (-)
G61302 NA non-coding downstream 487120 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 691570 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 1421738 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 1445385 10967180 ~ 10969599 (-)
G61470 NA non-coding upstream 12574 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 75573 12493801 ~ 12499426 (-)
G61488 NA non-coding upstream 160443 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 301139 12719367 ~ 12743437 (-)
G61558 NA non-coding upstream 386442 12804670 ~ 12805433 (-)
AMCG00020159 NA other downstream 362773 12001700 ~ 12052211 (-)
G61269 NA other downstream 713339 11695691 ~ 11701645 (-)
G61170 NA other downstream 1658565 10755468 ~ 10756419 (-)
G60746 NA other downstream 3575039 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3586875 8812785 ~ 8828109 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 66141 12484369 ~ 12509937 (-)
G61589 NA other upstream 579610 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 798768 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1177290 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 1245848 13664076 ~ 13665592 (-)

Expression


Co-expression Network